Glyma20g02921 - SoyBase

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Report for Sequence Feature Glyma20g02921

Feature Type:	gene_model
Chromosome:	Gm20
Start:	2643421
stop:	2645233
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02921

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF02451	PFAM	Nodulin	JGI		ISS
UniRef100_P04671	UniRef	Annotation by Michelle Graham. Best UniRef hit: Nodulin-C51 n=1 Tax=Glycine max RepID=NO51_SOYBN	SoyBase	E_val: 9.00E-162	ISS
UniRef100_P04671	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-C51 n=1 Tax=Glycine max RepID=NO51_SOYBN	SoyBase	E_val: 9.00E-162	ISS

Expression Patterns of Glyma20g02921

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02921 not represented in the dataset	Glyma20g02921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g02921 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g024200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02921

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g02921

Limit To All Plant Sequences

>Glyma20g02921.2   sequence type=transcript   gene model=Glyma20g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTATAAAATTCACATATTGTATGAGTATAAATACATGAGCACACACCAAACTAGTCTCAAATTAAGTAAGGTGCTAATTATTAGCGGCTAGCTAAGTAACCAAGTAATTAATGGAGAAAATGAGGGTGATAGTAATTACTGTATTCCTATTTATAGGTGCAGCAATTGCAGAAGATGTTGGTATTGGTCTCCTTAGCGAAGCTGAGGCGTATGTGTCTCCTAAGTTAAAAAAGTTCATCACACCTTGCACTTCGCATGTTGGTGAAACATGCAGTACTACTAGTAGTAGTGGAAGTGAAGCATTAATGCAGAACCAGGGTGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAGAGATGCTTGGTAGACCATGGTGCCCAACTTTATCAAACAAGTGTTACTAACCTTCAAGTTGAACCTTCTGAAGTATTTCCAAGGAAGAATAATCCACAAGGTGGACGTAAGTCCAAATTAGATGACCATCAAGTTCAACCCTTATCATTTCGATTACCACCATTTCGATTACCACCAATGCCAAAACTAGGACCAACAAGTCCGATTATAAGAACGATTCCATCACCACCCATAGCTCCTCGAGATTTGTCACTCATTGAGACTATACAATTACGAACTGCCTTGAGAACCTGTACTCATGTCACTGCACGAACTTGTCTCACTGCTCCAAATGTTGCCACATCTGATTTAGAGGCTTGTCTCACTCCATCCATGAATCAATGCATCTATCCTCGTGGAGCTGAATATGGTAGCCCGCCTATTAGGGCGTAAATTATTTCAGGCATAAAGGAAAATATGTTGGAAGTATTGCTAGTAGAAGAATAGCCAGACATGCGTCAACTAGATTTAAGCTAGCTAGCTTGTTTTATGATGAAGGATTTGTTATACCTTCAAAATTCCAAGTAGCTACTACATTGACATGCATAAATAAACATTGAATGTCACGAACGATATGGTGTTCCTACTAAATAATAATAAAACATGCTTTATTTCTATTTTTTCGTTGGATTCTTAGCATGCATAATCAATTCAGGTTGAACCTAGCTGCATCTGTTGAACGGGGGAAATCCAAATCCGTGTTGAACCCCCAATCTTAACAACAGAGTTCTTTATATTAATATTTTGTATCATTAATTGGGCAAATTTAGACTCTATTCTTTGCATCGTTCTTCAAATATACTTTTTTTTAGGGAATT

Coding sequences of Glyma20g02921

Limit To All Plant Sequences

>Glyma20g02921.1   sequence type=CDS   gene model=Glyma20g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAATGAGGGTGATAGTAATTACTGTATTCCTATTTATAGGTGCAGCAATTGCAGAAGATGTTGGTATTGGTCTCCTTAGCGAAGCTGAGGCGTATGTGTCTCCTAAGTTAAAAAAGTTCATCACACCTTGCACTTCGCATGTTGGTGAAACATGCAGTACTACTAGTAGTAGTGGAAGTGAAGCATTAATGCAGAACCAGGGTGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAGAGATGCTTGGTAGACCATGGTGCCCAACTTTATCAAACAAGTGTTACTAACCTTCAAGTTGAACCTTCTGAAGTATTTCCAAGGAAGAATAATCCACAAGGTGGACGTAAGTCCAAATTAGATGACCATCAAGTTCAACCCTTATCATTTCGATTACCACCATTTCGATTACCACCAATGCCAAAACTAGGACCAACAAGTCCGATTATAAGAACGATTCCATCACCACCCATAGCTCCTCGAGATTTGTCACTCATTGAGACTATACAATTACGAACTGCCTTGAGAACCTGTACTCATGTCACTGCACGAACTTGTCTCACTGCTCCAAATGTTGCCACATCTGATTTAGAGGCTTGTCTCACTCCATCCATGAATCAATGCATCTATCCTCGTGGAGCTGAATATGGTACCCCGCCTATTAGGGCGTAA

>Glyma20g02921.2   sequence type=CDS   gene model=Glyma20g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAATGAGGGTGATAGTAATTACTGTATTCCTATTTATAGGTGCAGCAATTGCAGAAGATGTTGGTATTGGTCTCCTTAGCGAAGCTGAGGCGTATGTGTCTCCTAAGTTAAAAAAGTTCATCACACCTTGCACTTCGCATGTTGGTGAAACATGCAGTACTACTAGTAGTAGTGGAAGTGAAGCATTAATGCAGAACCAGGGTGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAGAGATGCTTGGTAGACCATGGTGCCCAACTTTATCAAACAAGTGTTACTAACCTTCAAGTTGAACCTTCTGAAGTATTTCCAAGGAAGAATAATCCACAAGGTGGACGTAAGTCCAAATTAGATGACCATCAAGTTCAACCCTTATCATTTCGATTACCACCATTTCGATTACCACCAATGCCAAAACTAGGACCAACAAGTCCGATTATAAGAACGATTCCATCACCACCCATAGCTCCTCGAGATTTGTCACTCATTGAGACTATACAATTACGAACTGCCTTGAGAACCTGTACTCATGTCACTGCACGAACTTGTCTCACTGCTCCAAATGTTGCCACATCTGATTTAGAGGCTTGTCTCACTCCATCCATGAATCAATGCATCTATCCTCGTGGAGCTGAATATGGTAGCCCGCCTATTAGGGCGTAA

Predicted protein sequences of Glyma20g02921

Limit To All Plant Sequences

>Glyma20g02921.1   sequence type=predicted peptide   gene model=Glyma20g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMRVIVITVFLFIGAAIAEDVGIGLLSEAEAYVSPKLKKFITPCTSHVGETCSTTSSSGSEALMQNQGGLALCLFDSMERCLVDHGAQLYQTSVTNLQVEPSEVFPRKNNPQGGRKSKLDDHQVQPLSFRLPPFRLPPMPKLGPTSPIIRTIPSPPIAPRDLSLIETIQLRTALRTCTHVTARTCLTAPNVATSDLEACLTPSMNQCIYPRGAEYGTPPIRA*

>Glyma20g02921.2   sequence type=predicted peptide   gene model=Glyma20g02921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMRVIVITVFLFIGAAIAEDVGIGLLSEAEAYVSPKLKKFITPCTSHVGETCSTTSSSGSEALMQNQGGLALCLFDSMERCLVDHGAQLYQTSVTNLQVEPSEVFPRKNNPQGGRKSKLDDHQVQPLSFRLPPFRLPPMPKLGPTSPIIRTIPSPPIAPRDLSLIETIQLRTALRTCTHVTARTCLTAPNVATSDLEACLTPSMNQCIYPRGAEYGSPPIRA*

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