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Report for Sequence Feature Glyma20g02850

Feature Type:gene_model
Chromosome:Gm20
Start:2500303
stop:2505282
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g02850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31320AT Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172 SoyBaseE_val: 8.00E-73ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_C6SZW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZW3_SOYBN SoyBaseE_val: 8.00E-114ISS
UniRef100_G7JIR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JIR8_MEDTR SoyBaseE_val: 3.00E-96ISS

Expression Patterns of Glyma20g02850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g02850
ParalogEvidenceComments
Glyma07g35000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g02850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g023400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g02850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g02850
>Glyma20g02850.1   sequence type=CDS   gene model=Glyma20g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTTAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTCTATGGCTGTGTAGGGGCCATCTCATCTCTTCAGCAACAAATTGATGTGTTGCAGACCCAATTGGCAGTGGCACAGGCTGAGGCTGTGCACCTCAGAGTGCGCCAAGCTGCATCACTCTACAGCCCCACTAGCCCAACCAACAGTGGCTCTCCATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGACCCCCTATGGTGATTCAATCTGGTGA
Predicted protein sequences of Glyma20g02850
>Glyma20g02850.1   sequence type=predicted peptide   gene model=Glyma20g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQAASLYSPTSPTNSGSPSQAKPIFDMDMVVDQTPYGDSIW*






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