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Report for Sequence Feature Glyma20g02780

Feature Type:gene_model
Chromosome:Gm20
Start:2359307
stop:2365095
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g02780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04340AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1514411-1515203 FORWARD LENGTH=173 SoyBaseE_val: 3.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1NDG0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDG0_SOYBN SoyBaseE_val: 4.00E-88ISS

Expression Patterns of Glyma20g02780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02780 not represented in the dataset
Glyma20g02780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g02780
ParalogEvidenceComments
Glyma07g34940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g02780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g022600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g02780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g02780
>Glyma20g02780.1   sequence type=CDS   gene model=Glyma20g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTAGTGAGGCGTAGATTGTTGCACACTCTTCGCGGCGGCGCCGCCCCGTCGGAAACACTGAAGAGAAGAGCGTTGGAATTGGAGAAGAAGAGAAAGACTCGGCACTCGAAGACCAAGGACCAGTTCATCGTCACGGTTCCCGAATCCCTCTCCTTCCTCGACACCGCCACCATCCCCATGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCCCTAGAGGGCGAGGTAGTGTCAAAATGTCACACGAGAGGAGTGGGAGGAGTATCGAGAAGTCAGGCCCAGGACTCCGTTTGAGTCCACGCTTGCCCGCCCTAATTCCAAAATAA
Predicted protein sequences of Glyma20g02780
>Glyma20g02780.1   sequence type=predicted peptide   gene model=Glyma20g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVVRRRLLHTLRGGAAPSETLKRRALELEKKRKTRHSKTKDQFIVTVPESLSFLDTATIPMYFAAIGIALLAKLLMTYDDSRSQELLERKIKNAPRGRGSVKMSHERSGRSIEKSGPGLRLSPRLPALIPK*






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