SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10180 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:3338381-3341494 REVERSE LENGTH=769 | SoyBase | E_val: 0 | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2215 | KOG | Exocyst complex subunit | JGI | ISS | |
| PTHR21426 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21426:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_I1NDE6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDE6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SY60 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F14N23.6 n=2 Tax=Arabidopsis thaliana RepID=Q9SY60_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma20g02670 not represented in the dataset |
Glyma20g02670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g34880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g021700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02670.2 sequence type=transcript gene model=Glyma20g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGCAACTAAAGAGGCACTTTCACTTTCTTGTGAGAGGTGGACAGAGAGAGACTCAGGGAGAGAATGGAGAGTAGCGAGGAAGAAGATGATTTCCCTTCCATTGAGAGCATCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTCTGCCGTGAATTGGAAGAGTGGAATCAATCAAGCAACGATGTTGCTGAAATTCAGCAAGAACCTGAACTACCTGAACTCCTTGAGCCTTTACCAAATGAGAGAAATGACCAGAAAATATTATTCTTGGAAACCATCGATGTACTTTTGGCTGAGCATAAGTTTGAAGAAGCATTAGAAGCATTAGATGCTGAAGAAATAAATTCTGCAGAGTTGAAGGGCTCAGGGAATAACTCTTCAGATGATGTTTCCTTGTACAAGTCTTCCTTGTTGGAAAGGAAGGCAATGCTTGAAGACCAGCTGGTTGGAATTGCTGAACAACCTTCTGTTAGTTTCCCTGAGCTGAAAACAGCTTTAAATGGTTTAATAAAACTTGGAAAAGGTCCTCTAGCACATCAACTAATGCTGAAGTTTTATCAGTCTCACCTCCAGAAGAGAATTGAGGCTTTGCTTCCCTCAAGTTCTCTCTGTCCTGAAACATTTCCTTCTACATTATCCAAGATTGTGTTTTCTGTAATATCACTGACAATAAAGGAATCTGCTTTGATTTTTGGAGATAATCCTGTTTATACCAACAGAGTTGTTCAGTGGGCAGAGTGGGAAATTGAATATTTTGTACGAGTGGTGAAAGAGAATGCACCCTTATCTGAGACTGTTTCTGCCTTACGTGCTGCTAGCATCAGCATTCAGGCTAGTCTGAACTACTGCTCAATCTTGGAATCACAAGGATTGAAATTGTCTAAATTACTGTTGGTGCTTCTGCGCCCTTCTGTTGAAGAAGTTTTAGAATCAAATTTTAGACGTGCTAGAAGAGTAGTGCTTGACATGGCTGAATGTTGCCCGTTGTCACCACAGTTTGCATCTTCACTTTCTGCAATTGCTAGTTCATCTAGTAGCATGCTTGTTGAGAGTGGAATGCGATTTATGCACATAGTTGAAGAGATATTGGAACAGCTAACGCCAACGGTTAGTTTGCATTTCGGAGGAAATGTACTGAACAGAATCTTACAACTATTTGATAAATACATGGATGCTCTTACCAGAGCACTACCAGGTCCTTCTGATGATGACAATCTTCCAGAACTGAAAGAGGTCGCGCTTTTCAGAGCTGAGACTGACTCAGAACAACTTGCAATATTGGGAATAGCATTTACGATATTGGATGAACTGTTACCAAATGCTGTGTTATCAAGGTGGATGCTGCAAAGTGAAAGCAAGGCCAAGGAACCAAATAGTGGAGCAACAGAGAATGTAACCTTCAATACAAATGCTAGTGTAGAATTGAAGGAGTGGAGGAAACATCTTCAGCATTCTTTTGACAAACTTCGGGATCACTTCTGTCTGCAATATATTGTTACTTTCATCTATTCAAGAGAGGGAAAAACACGGTTGAATGCACATATTTACTTGAGTGATAACAGAGAGGATCTTTACTGGGATTCTGACCCACTGCCTTCGCTGCCATTTCAGGCATTATTTGCAAAGCTGCAACAATTAGCAACTGTGGCTGGAGATGTATTACTTGGGAAAGAGAAAATACAGAAAATGTTGCTAGCTAGGTTAACAGAGACTCTTGTCATGTGGTTGTCTGATGAGCAAGAGTTCTGGGGTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGTGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAACAAGCTCTTGCTTGGGGCATCAGGGTCTGAGGCATCCGACACCGATGAAGATCACATCATTGTTCATCATGACGAAGTTGTCTCAGACTCTGATACTGTTTCATCCCTGTCTTCTACGGAATCAACCGAGTCTTTTGCATCTGCTAGCATGGCCGAACTTGACAGCCCCTCTAACTTGTCTGATCCAGATAATTGATTTTTTTTTTTCTCTCTGGATTATTTAAAATATAGAGTAGTTGTAGTTTGAGATTTTGAGAAAAATGTAAGTGTCCTCAGTTATCACATTTGCAATGTCATGGCATATTGTAGGACATGTTCATAGACCGTGCTAGGGGATAGGAAGATCCCTTGGATTTAAATTAGGGTCGAAGAGTAAGTGTAGATTGATATCTCATGTGTATATTTTGAAAGGAGGGTAAGGTGGCTTGGGTTTCTCTATTCCCGTTTTTTTTTTTGTATTGATTGATATATTTTTGGTCGACATATTTTGATGATGGCTCTTTCTTTTTGCACATTCCCTTTTAATATTTTATATGCTAAAAATGTTTCTTTCCTCTCATCCTTGATACCTCTT
>Glyma20g02670.1 sequence type=CDS gene model=Glyma20g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGTAGCGAGGAAGAAGATGATTTCCCTTCCATTGAGAGCATCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTCTGCCGTGAATTGGAAGAGTGGAATCAATCAAGCAACGATGTTGCTGAAATTCAGCAAGAACCTGAACTACCTGAACTCCTTGAGCCTTTACCAAATGAGAGAAATGACCAGAAAATATTATTCTTGGAAACCATCGATGTACTTTTGGCTGAGCATAAGTTTGAAGAAGCATTAGAAGCATTAGATGCTGAAGAAATAAATTCTGCAGAGTTGAAGGGCTCAGGGAATAACTCTTCAGATGATGTTTCCTTGTACAAGTCTTCCTTGTTGGAAAGGAAGGCAATGCTTGAAGACCAGCTGGTTGGAATTGCTGAACAACCTTCTGTTAGTTTCCCTGAGCTGAAAACAGCTTTAAATGGTTTAATAAAACTTGGAAAAGGTCCTCTAGCACATCAACTAATGCTGAAGTTTTATCAGTCTCACCTCCAGAAGAGAATTGAGGCTTTGCTTCCCTCAAGTTCTCTCTGTCCTGAAACATTTCCTTCTACATTATCCAAGATTGTGTTTTCTGTAATATCACTGACAATAAAGGAATCTGCTTTGATTTTTGGAGATAATCCTGTTTATACCAACAGAGTTGTTCAGTGGGCAGAGTGGGAAATTGAATATTTTGTACGAGTGGTGAAAGAGAATGCACCCTTATCTGAGACTGTTTCTGCCTTACGTGCTGCTAGCATCAGCATTCAGGCTAGTCTGAACTACTGCTCAATCTTGGAATCACAAGGATTGAAATTGTCTAAATTACTGTTGGTGCTTCTGCGCCCTTCTGTTGAAGAAGTTTTAGAATCAAATTTTAGACGTGCTAGAAGAGTAGTGCTTGACATGGCTGAATGTTGCCCGTTGTCACCACAGTTTGCATCTTCACTTTCTGCAATTGCTAGTTCATCTAGTAGCATGCTTGTTGAGAGTGGAATGCGATTTATGCACATAGTTGAAGAGATATTGGAACAGCTAACGCCAACGGTTAGTTTGCATTTCGGAGGAAATGTACTGAACAGAATCTTACAACTATTTGATAAATACATGGATGCTCTTACCAGAGCACTACCAGGTCCTTCTGATGATGACAATCTTCCAGAACTGAAAGAGGTCGCGCTTTTCAGAGCTGAGACTGACTCAGAACAACTTGCAATATTGGGAATAGCATTTACGATATTGGATGAACTGTTACCAAATGCTGTGTTATCAAGGTGGATGCTGCAAAGTGAAAGCAAGGCCAAGGAACCAAATAGTGGAGCAACAGAGAATGTAACCTTCAATACAAATGCTAGTGTAGAATTGAAGGAGTGGAGGAAACATCTTCAGCATTCTTTTGACAAACTTCGGGATCACTTCTGTCTGCAATATATTGTTACTTTCATCTATTCAAGAGAGGGAAAAACACGGTTGAATGCACATATTTACTTGAGTGATAACAGAGAGGATCTTTACTGGGATTCTGACCCACTGCCTTCGCTGCCATTTCAGGCATTATTTGCAAAGCTGCAACAATTAGCAACTGTGGCTGGAGATGTATTACTTGGGAAAGAGAAAATACAGAAAATGTTGCTAGCTAGGTTAACAGAGACTCTTGTCATGTGGTTGTCTGATGAGCAAGAGTTCTGGGGTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGTGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAACAAGCTCTTGCTTGGGGCATCAGGGTCTGAGGCATCCGACACCGATGAAGATCACATCATTGTTCATCATGACGAAGTTGTCTCAGACTCTGATACTGTTTCATCCCTGTCTTCTACGGAATCAACCGAGTCTTTTGCATCTGCTAGCATGGCCGAACTTGACAGCCCCTCTAACTTGTCTGATCCAGATAATTGA >Glyma20g02670.2 sequence type=CDS gene model=Glyma20g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCCCTTCCATTGAGAGCATCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTCTGCCGTGAATTGGAAGAGTGGAATCAATCAAGCAACGATGTTGCTGAAATTCAGCAAGAACCTGAACTACCTGAACTCCTTGAGCCTTTACCAAATGAGAGAAATGACCAGAAAATATTATTCTTGGAAACCATCGATGTACTTTTGGCTGAGCATAAGTTTGAAGAAGCATTAGAAGCATTAGATGCTGAAGAAATAAATTCTGCAGAGTTGAAGGGCTCAGGGAATAACTCTTCAGATGATGTTTCCTTGTACAAGTCTTCCTTGTTGGAAAGGAAGGCAATGCTTGAAGACCAGCTGGTTGGAATTGCTGAACAACCTTCTGTTAGTTTCCCTGAGCTGAAAACAGCTTTAAATGGTTTAATAAAACTTGGAAAAGGTCCTCTAGCACATCAACTAATGCTGAAGTTTTATCAGTCTCACCTCCAGAAGAGAATTGAGGCTTTGCTTCCCTCAAGTTCTCTCTGTCCTGAAACATTTCCTTCTACATTATCCAAGATTGTGTTTTCTGTAATATCACTGACAATAAAGGAATCTGCTTTGATTTTTGGAGATAATCCTGTTTATACCAACAGAGTTGTTCAGTGGGCAGAGTGGGAAATTGAATATTTTGTACGAGTGGTGAAAGAGAATGCACCCTTATCTGAGACTGTTTCTGCCTTACGTGCTGCTAGCATCAGCATTCAGGCTAGTCTGAACTACTGCTCAATCTTGGAATCACAAGGATTGAAATTGTCTAAATTACTGTTGGTGCTTCTGCGCCCTTCTGTTGAAGAAGTTTTAGAATCAAATTTTAGACGTGCTAGAAGAGTAGTGCTTGACATGGCTGAATGTTGCCCGTTGTCACCACAGTTTGCATCTTCACTTTCTGCAATTGCTAGTTCATCTAGTAGCATGCTTGTTGAGAGTGGAATGCGATTTATGCACATAGTTGAAGAGATATTGGAACAGCTAACGCCAACGGTTAGTTTGCATTTCGGAGGAAATGTACTGAACAGAATCTTACAACTATTTGATAAATACATGGATGCTCTTACCAGAGCACTACCAGGTCCTTCTGATGATGACAATCTTCCAGAACTGAAAGAGGTCGCGCTTTTCAGAGCTGAGACTGACTCAGAACAACTTGCAATATTGGGAATAGCATTTACGATATTGGATGAACTGTTACCAAATGCTGTGTTATCAAGGTGGATGCTGCAAAGTGAAAGCAAGGCCAAGGAACCAAATAGTGGAGCAACAGAGAATGTAACCTTCAATACAAATGCTAGTGTAGAATTGAAGGAGTGGAGGAAACATCTTCAGCATTCTTTTGACAAACTTCGGGATCACTTCTGTCTGCAATATATTGTTACTTTCATCTATTCAAGAGAGGGAAAAACACGGTTGAATGCACATATTTACTTGAGTGATAACAGAGAGGATCTTTACTGGGATTCTGACCCACTGCCTTCGCTGCCATTTCAGGCATTATTTGCAAAGCTGCAACAATTAGCAACTGTGGCTGGAGATGTATTACTTGGGAAAGAGAAAATACAGAAAATGTTGCTAGCTAGGTTAACAGAGACTCTTGTCATGTGGTTGTCTGATGAGCAAGAGTTCTGGGGTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGTGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAACAAGCTCTTGCTTGGGGCATCAGGGTCTGAGGCATCCGACACCGATGAAGATCACATCATTGTTCATCATGACGAAGTTGTCTCAGACTCTGATACTGTTTCATCCCTGTCTTCTACGGAATCAACCGAGTCTTTTGCATCTGCTAGCATGGCCGAACTTGACAGCCCCTCTAACTTGTCTGATCCAGATAATTGA
>Glyma20g02670.1 sequence type=predicted peptide gene model=Glyma20g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSEEEDDFPSIESIIPQSKVDSLYQSHTEKGIRKLCCELLDLKDSVENLCGNMHSKFLAFLRISEEAVEVKHELIELQKHISAQGILVQDLMTGVCRELEEWNQSSNDVAEIQQEPELPELLEPLPNERNDQKILFLETIDVLLAEHKFEEALEALDAEEINSAELKGSGNNSSDDVSLYKSSLLERKAMLEDQLVGIAEQPSVSFPELKTALNGLIKLGKGPLAHQLMLKFYQSHLQKRIEALLPSSSLCPETFPSTLSKIVFSVISLTIKESALIFGDNPVYTNRVVQWAEWEIEYFVRVVKENAPLSETVSALRAASISIQASLNYCSILESQGLKLSKLLLVLLRPSVEEVLESNFRRARRVVLDMAECCPLSPQFASSLSAIASSSSSMLVESGMRFMHIVEEILEQLTPTVSLHFGGNVLNRILQLFDKYMDALTRALPGPSDDDNLPELKEVALFRAETDSEQLAILGIAFTILDELLPNAVLSRWMLQSESKAKEPNSGATENVTFNTNASVELKEWRKHLQHSFDKLRDHFCLQYIVTFIYSREGKTRLNAHIYLSDNREDLYWDSDPLPSLPFQALFAKLQQLATVAGDVLLGKEKIQKMLLARLTETLVMWLSDEQEFWGALEDNSAPLKPLGLQQLILDMHFTVEIARFAGYPSRHIHQIASAITARAIRTFSARGIDPQSALPEDEWFVETAKSAINKLLLGASGSEASDTDEDHIIVHHDEVVSDSDTVSSLSSTESTESFASASMAELDSPSNLSDPDN* >Glyma20g02670.2 sequence type=predicted peptide gene model=Glyma20g02670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISLPLRASFPSPRLTLSISLTPKRKLCCELLDLKDSVENLCGNMHSKFLAFLRISEEAVEVKHELIELQKHISAQGILVQDLMTGVCRELEEWNQSSNDVAEIQQEPELPELLEPLPNERNDQKILFLETIDVLLAEHKFEEALEALDAEEINSAELKGSGNNSSDDVSLYKSSLLERKAMLEDQLVGIAEQPSVSFPELKTALNGLIKLGKGPLAHQLMLKFYQSHLQKRIEALLPSSSLCPETFPSTLSKIVFSVISLTIKESALIFGDNPVYTNRVVQWAEWEIEYFVRVVKENAPLSETVSALRAASISIQASLNYCSILESQGLKLSKLLLVLLRPSVEEVLESNFRRARRVVLDMAECCPLSPQFASSLSAIASSSSSMLVESGMRFMHIVEEILEQLTPTVSLHFGGNVLNRILQLFDKYMDALTRALPGPSDDDNLPELKEVALFRAETDSEQLAILGIAFTILDELLPNAVLSRWMLQSESKAKEPNSGATENVTFNTNASVELKEWRKHLQHSFDKLRDHFCLQYIVTFIYSREGKTRLNAHIYLSDNREDLYWDSDPLPSLPFQALFAKLQQLATVAGDVLLGKEKIQKMLLARLTETLVMWLSDEQEFWGALEDNSAPLKPLGLQQLILDMHFTVEIARFAGYPSRHIHQIASAITARAIRTFSARGIDPQSALPEDEWFVETAKSAINKLLLGASGSEASDTDEDHIIVHHDEVVSDSDTVSSLSSTESTESFASASMAELDSPSNLSDPDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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