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Report for Sequence Feature Glyma20g02640

Feature Type:gene_model
Chromosome:Gm20
Start:2196597
stop:2198753
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g02640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47310AT Annotation by Michelle Graham. TAIR10: flowering time control protein-related / FCA gamma-related | chr2:19423791-19426846 FORWARD LENGTH=512 SoyBaseE_val: 6.00E-16ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
UniRef100_G7KTN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: FCA-like protein n=1 Tax=Medicago truncatula RepID=G7KTN3_MEDTR SoyBaseE_val: 4.00E-16ISS
UniRef100_I1NBE2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBE2_SOYBN SoyBaseE_val: 4.00E-22ISS

Expression Patterns of Glyma20g02640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02640 not represented in the dataset
Glyma20g02640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g02640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g02640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g02640
>Glyma20g02640.1   sequence type=CDS   gene model=Glyma20g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTATGTTATTGGGAGTAGCATCAAATCGATTCCTATTGTTGGAAAGGATATTACTCTTTTTGTTCAACAGCTTATGCGGGTGGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTACAATCAAACGGCTAAATAAAACCTTCATGATGAGAGGTTGTGATCATCCTTTAATTGTTCATTTTGTGGATCCTAAGAAGCCTAAGACTGGAGAATCA
Predicted protein sequences of Glyma20g02640
>Glyma20g02640.1   sequence type=predicted peptide   gene model=Glyma20g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GYVIGSSIKSIPIVGKDITLFVQQLMRVGYAFVKFSNREMALATIKRLNKTFMMRGCDHPLIVHFVDPKKPKTGES






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