Glyma20g02550 - SoyBase

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Report for Sequence Feature Glyma20g02550

Feature Type:	gene_model
Chromosome:	Gm20
Start:	2134219
stop:	2136710
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45040	AT	Annotation by Michelle Graham. TAIR10: Cytochrome c \| chr5:18175566-18176851 REVERSE LENGTH=175	SoyBase	E_val: 1.00E-18	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
UniRef100_A2Q293	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c, monohaem n=1 Tax=Medicago truncatula RepID=A2Q293_MEDTR	SoyBase	E_val: 2.00E-32	ISS
UniRef100_I1NDD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDD9_SOYBN	SoyBase	E_val: 7.00E-62	ISS

Expression Patterns of Glyma20g02550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02550 not represented in the dataset	Glyma20g02550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g02550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g020600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g02550

Limit To All Plant Sequences

>Glyma20g02550.2   sequence type=transcript   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACGTGCGTGTCACGTGTTAGTGAGTGGATTGGAGTTAAGCAGCCACTCCTGGACTCTTACGTTGTTGACATATCCTGTTTCAGTTGCGCTTAAGGTTTTCTTCTTATTACATAGGAACAAACGAAATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGATTTAATACATATTTGGTTCAATTTAATGAATTTATAAAAAACAATTGCTTGTTCGTTTCAATTTTTTAAGGGAACTTTTGGAAATTAAATGATTTTTTATGTCCAATTGAGCTGAACAAAGCATGCTATTAACTTTTGTTTCATCTTTTCATAATATATGAATGTTTGGTTTACAGTTATTTTGAGCTTACACAGTTATTTTGTGCGCAGACATATGCTGGCATGGAA

>Glyma20g02550.3   sequence type=transcript   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACGTGCGTGTCACGTGTTAGTGAGTGGATTGGAGTTAAGCAGCCACTCCTGGACTCTTACGTTGTTGACATATCCTGTTTCAGTTGCGCTTAAGGTTTTCTTCTTATTACATAGGAACAAACGAAATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGGCAACTCTATTTACAAAGGATTTACAGAGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGATTTAATACATATTTGGTTCAATTTAATGAATTTATAAAAAACAATTGCTTGTTCGTTTCAATTTTTTAAGGGAACTTTTGGAAATTAAATGATTTTTTATGTCCAATTGAGCTGAACAAAGCATGCTATTAACTTTTGTTTCATCTTTTCATAATATATGAATGTTTGGTTTACAGTTATTTTGAGCTTACACAGTTATTTTGTGCGCAGACATATGCTGGCATGGAA

>Glyma20g02550.4   sequence type=transcript   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACGTGCGTGTCACGTGTTAGTGAGTGGATTGGAGTTAAGCAGCCACTCCTGGACTCTTACGTTGTTGACATATCCTGTTTCAGTTGCGCTTAAGGTTTTCTTCTTATTACATAGGAACAAACGAAATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGAAAAAGAGAGAAACTGATCACAAGTAGAATGCTGGGTATTGAATAATTATTGATTTAAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGGCAACTCTATTTACAAAGGATTTACAGAGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGATTTAATACATATTTGGTTCAATTTAATGAATTTATAAAAAACAATTGCTTGTTCGTTTCAATTTTTTAAGGGAACTTTTGGAAATTAAATGATTTTTTATGTCCAATTGAGCTGAACAAAGCATGCTATTAACTTTTGTTTCATCTTTTCATAATATATGAATGTTTGGTTTACAGTTATTTTGAGCTTACACAGTTATTTTGTGCGCAGACATATGCTGGCATGGAA

>Glyma20g02550.5   sequence type=transcript   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACGTGCGTGTCACGTGTTAGTGAGTGGATTGGAGTTAAGCAGCCACTCCTGGACTCTTACGTTGTTGACATATCCTGTTTCAGTTGCGCTTAAGGTTTTCTTCTTATTACATAGGAACAAACGAAATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGAAAAAGAGAGAAACTGATCACAAGTAGAATGCTGGGTATTGAATAATTATTGATTTAAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGATTTAATACATATTTGGTTCAATTTAATGAATTTATAAAAAACAATTGCTTGTTCGTTTCAATTTTTTAAGGGAACTTTTGGAAATTAAATGATTTTTTATGTCCAATTGAGCTGAACAAAGCATGCTATTAACTTTTGTTTCATCTTTTCATAATATATGAATGTTTGGTTTACAGTTATTTTGAGCTTACACAGTTATTTTGTGCGCAGACATATGCTGGCATGGAA

>Glyma20g02550.6   sequence type=transcript   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACGTGCGTGTCACGTGTTAGTGAGTGGATTGGAGTTAAGCAGCCACTCCTGGACTCTTACGTTGTTGACATATCCTGTTTCAGTTGCGCTTAAGGTTTTCTTCTTATTACATAGGAACAAACGAAATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGAAAAAGAGAGAAACTGATCACAAGTAGAATGCTGGGTATTGAATAATTATTGATTTAAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGATTTAATACATATTTGGTTCAATTTAATGAATTTATAAAAAACAATTGCTTGTTCGTTTCAATTTTTTAAGGGAACTTTTGGAAATTAAATGATTTTTTATGTCCAATTGAGCTGAACAAAGCATGCTATTAACTTTTGTTTCATCTTTTCATAATATATGAATGTTTGGTTTACAGTTATTTTGAGCTTACACAGTTATTTTGTGCGCAGACATATGCTGGCATGGAA

Coding sequences of Glyma20g02550

Limit To All Plant Sequences

>Glyma20g02550.1   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGA

>Glyma20g02550.2   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGAAATGA

>Glyma20g02550.3   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATTGCTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGGCAACTCTATTTACAAAGGATTTACAGAGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAG

>Glyma20g02550.4   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGGCAACTCTATTTACAAAGGATTTACAGAGAAATGAAGTTGATACAGAAGAAGCAATCTATCGTGTCACATACTATGGCAAAGCACGAATGCCAGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAG

>Glyma20g02550.5   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGGGCTTTGGTAAAGAGTGCATGCCACGGGGTCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATCAAGACATTGGCCGAGTTTGTCAAGTTACAGGCTGATCAAGGGTGGCCAAGTATAGAGACTAAAGAAGAATGA

>Glyma20g02550.6   sequence type=CDS   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCTTATCTCCAATTTGCAGCATTCCAGTTTCAAGTGCTCAAACCGTAGATATTCAGAGAGGAACCACGTTGTTTCGTCAAGCTTGTATTGGATGCCATGATGCAGGTGGAAACATAATACAACCGAAATGA

Predicted protein sequences of Glyma20g02550

Limit To All Plant Sequences

>Glyma20g02550.1   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIASLISGCNDYTHLLSIKEHVMREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPGFGKECMPRGQCTFGARLEDEDIKTLAEFVKLQADQGWPSIETKEE*

>Glyma20g02550.2   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIASLISGCNDYTHLLSIKEHVMREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPK*

>Glyma20g02550.3   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIASLISGCNDYTHLLSIKEHVMREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPGQLYLQRIYREMKLIQKKQSIVSHTMAKHECQALVKSACHGVSAHLELVWKMKISRHWPSLSSYRLIKGGQV*

>Glyma20g02550.4   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPGQLYLQRIYREMKLIQKKQSIVSHTMAKHECQALVKSACHGVSAHLELVWKMKISRHWPSLSSYRLIKGGQV*

>Glyma20g02550.5   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPGFGKECMPRGQCTFGARLEDEDIKTLAEFVKLQADQGWPSIETKEE*

>Glyma20g02550.6   sequence type=predicted peptide   gene model=Glyma20g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREEKPIPTTRKSEVKFLKSLTRLVAAFLVLSPICSIPVSSAQTVDIQRGTTLFRQACIGCHDAGGNIIQPK*

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