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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19900 | AT | Annotation by Michelle Graham. TAIR10: alpha 1,4-glycosyltransferase family protein | chr4:10789144-10791433 REVERSE LENGTH=644 | SoyBase | E_val: 0 | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005795 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack | SoyBase | N/A | ISS |
| GO:0008378 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG1928 | KOG | Alpha-1,4-N-acetylglucosaminyltransferase | JGI | ISS | |
| PTHR12042 | Panther | LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE (ALPHA- 1,4-GALACTOSYLTRANSFERASE) | JGI | ISS | |
| PF04488 | PFAM | Glycosyltransferase sugar-binding region containing DXD motif | JGI | ISS | |
| PF04572 | PFAM | Alpha 1,4-glycosyltransferase conserved region | JGI | ISS | |
| UniRef100_B9SDS1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lactosylceramide 4-alpha-galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SDS1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DA27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA27 related cluster n=1 Tax=unknown RepID=UPI000233DA27 | SoyBase | E_val: 0 | ISS |
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Glyma20g02454 not represented in the dataset |
Glyma20g02454 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g34721 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g020100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02454.1 sequence type=CDS gene model=Glyma20g02454 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCGTTCACGGCGGCGCTCCCCTTACGGCGCCTACCTCTGCGCCGTGATCTCCGCCGTGCTCCTCCTCTTCTCCGTCTCCCTCCTCTACTCCCGCCTCTCCCGCTCCCACCCCCACTCCCACCACCTCCCCCGTCCCTCCCTCGTTTCCCACTCCACCTCCGCCGACATCTCCATCGCCTCCTCCGACGACCCCATCGACGAGCTCGACTTCATCGACGAAACCCTAGATCCCCCCTCCCTCCGCCTCAACCCTCCCCCCTACCACCTCTTCTTCGATCCCCTCTCCGCCTCCCTCCGCCGCTCCTTCCACCACCGTCACTCCGACAACAACAATAATTTCCCCTTCCAATCCTTCTCCGATAATGATGACCGTTCCAAAACCGCATTCGCCTCCGACGACGTTCCCGTGGACTTCACCGTCCGTTCCATGGCGGCGCGTGTGGCCACAATCGACGACGCGCTGCTGCTCAAAACCTCTCCCTTAAGAGAAGGATGGAGCGACTGGTTCGACAAGAAGAGTGTGTTTTTAAGAAAGGATAGAATGTTCAGATCCAACTTCGACGTGCTTAACCCTCTCAACAACCCCTTGCTTCAAGATCCCGACGCCGGCGCCGCCACCACCGGACTCACCAGGGGGGACAGAATTGTCCAGAAGTGGTGGATCCATGAGTTCAAGAAAGTTCCATTCCCTGGTATCAAGAAGAAGGCTCCTCTTAATGTCAATGTCAACACTCTCACCAAAGTTGGCATAGAACGCAGAACTTTGAATCATAACCACAACAACAATGATGATGATAATAATAATAATGAGATTATTAAAGAAGTTGTAAATTCTGGTAGCAATGGTGGTGAATCGAGCATTCAGAAAGATGTTGATGTTATTGGTGCTGATAGAGGTGTGTCTGTGAAGAATCATGTTGTAAATTCTGGTAGCAATGGTGGTGAATCGAGCATTGAGAAAGATGTTGATGTTGTTGGTGCTGCTAGGGGTGTGTCTGTGAAGAATCATGTGTATGCGGATGGGGATACTTGGGGCTACTACCCTGGATTGCCGCGGCTGCGATTGTCGTTCAGTGATTTCATGGATGAGTTTTTCAGGCTGGGGAAATGTGTTACTAGAGTGTTTATGGTGTGGAATTCGCCACCTTGGATGTACACTGTTCGGCATCAGCGTGGTCTCGAGAGTTTGCTCTTTCATCACCCCGATGCTTGTGTTGTTGTGTTCTCCGAGACGGTGGAACTTGATTTCTTCAAGGACAGCTTTGTTAAGGATGGGTACAAAGTTGCTGTTGCTATGCCAAATCTTGATGAGCTTCTGAAGGATATGCCTGCTCACATTTTTGCTTCTGTGTGGTTTGAATGGAAGAAGACAAATTTCTATTCTACTCATTACAGTGAGCTTATCCGCCTTGCTGCTCTGTACAAGTATGGTGGGATCTATCTAGATTCAGATATCATCGTGTTGAAGCCGATTTCTTTTCTTAATAATTCTGTTGGTATGGAGGGTCATGGTGCTGGAAGTGCTTTGAATGGTGCTGTAATGTCTTTTCCAAGACACAGTTTGTTCGTAAAGGAGTGTTTGGAAGAGTTCTACATGACATATGATGATACCAGTTTGAGAGGGAATGGTGCTGATCTGTTGACGAGGGTTGCTCGAAAATATTTAGGAGATGAGAATAAATCTGTTAAGCACTTGGAGTTGAAAGTAGAACCCTCTTATATCTTCTTCCCTGTTAGTTCTCAGAACATAACAAGATACTTCATTGCACCGACGACAGAGACTGAGAAAGCTCAACAAGATGTGCTGCTTGAAAATATCCTGCACAATTCGTTGACATTTCATTTCTGGAACAGCGTGACATTTTCTCTCATCCCTGAACCAGATAGCCTTGTCTCCAAGCTTTTGAATTATGCTTGTATCCGATGCTCGGAATTACCGTGA
>Glyma20g02454.1 sequence type=predicted peptide gene model=Glyma20g02454 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRSRRRSPYGAYLCAVISAVLLLFSVSLLYSRLSRSHPHSHHLPRPSLVSHSTSADISIASSDDPIDELDFIDETLDPPSLRLNPPPYHLFFDPLSASLRRSFHHRHSDNNNNFPFQSFSDNDDRSKTAFASDDVPVDFTVRSMAARVATIDDALLLKTSPLREGWSDWFDKKSVFLRKDRMFRSNFDVLNPLNNPLLQDPDAGAATTGLTRGDRIVQKWWIHEFKKVPFPGIKKKAPLNVNVNTLTKVGIERRTLNHNHNNNDDDNNNNEIIKEVVNSGSNGGESSIQKDVDVIGADRGVSVKNHVVNSGSNGGESSIEKDVDVVGAARGVSVKNHVYADGDTWGYYPGLPRLRLSFSDFMDEFFRLGKCVTRVFMVWNSPPWMYTVRHQRGLESLLFHHPDACVVVFSETVELDFFKDSFVKDGYKVAVAMPNLDELLKDMPAHIFASVWFEWKKTNFYSTHYSELIRLAALYKYGGIYLDSDIIVLKPISFLNNSVGMEGHGAGSALNGAVMSFPRHSLFVKECLEEFYMTYDDTSLRGNGADLLTRVARKYLGDENKSVKHLELKVEPSYIFFPVSSQNITRYFIAPTTETEKAQQDVLLENILHNSLTFHFWNSVTFSLIPEPDSLVSKLLNYACIRCSELP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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