SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49350 | AT | Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr1:18265070-18267034 FORWARD LENGTH=378 | SoyBase | E_val: 1.00E-142 | ISS |
| GO:0006014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-ribose metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribokinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2855 | KOG | Ribokinase | JGI | ISS | |
| PTHR10584 | Panther | SUGAR KINASE RELATED | JGI | ISS | |
| PTHR10584:SF15 | Panther | FRUCTOKINASE-RELATED | JGI | ISS | |
| PF00294 | PFAM | pfkB family carbohydrate kinase | JGI | ISS | |
| UniRef100_I1NDC7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDC7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2MGQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbohydrate kinase, PfkB n=1 Tax=Medicago truncatula RepID=Q2MGQ0_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma20g02420 not represented in the dataset |
Glyma20g02420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g019800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02420.2 sequence type=transcript gene model=Glyma20g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACAGAGTCTCTCAAAGGGTTATTTCCTGCTTCTCTCTCATCTATTGACTCATCCATTACCTGAACAAACACCTAGGATTTTGTCCTGTTCCCTTCATTTCATTTTCATTGGATTTATATAGCATTGCAACGATCGGATAGCTATTTGCTACTTGATTGATTCTTTGCCAGCGTGGGATTTGAGAAAGAAAAAAAAAACAGTAACAGGAAAGGAGGGTAGCATTAAGGGAAGAACTCAGGTTGCGGGAAGAGGTAAAAAAAATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAAATTTTGAATGAGGATGACTGGTAGATAAACAGCTTGAGTTGCGATACAACCACCACCTTTGCCCAGAAAAAATGATAACATCTTACAAAGGCTTGTGGCATTGAAATATGAATTAATAACTATATTTTTTTAGTTTTTATTTCATATTTTTCTATAAGAGTTTAATTGATACACTTTTTTTTAAACATTGATATGCACTTTTGCACTAACATGTTATACTTGATCATGTCATGATGTCGGTCTTTGTAGTGAATATTTTTCCCCCTAGAATCTATATTTTTACACATTTATATAGCATCA
>Glyma20g02420.1 sequence type=CDS gene model=Glyma20g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGATGATGCTAAATCTGTTTACTCAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA >Glyma20g02420.2 sequence type=CDS gene model=Glyma20g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA
>Glyma20g02420.1 sequence type=predicted peptide gene model=Glyma20g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITDDAKSVYSGAKVLFPQSML* >Glyma20g02420.2 sequence type=predicted peptide gene model=Glyma20g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITGAKVLFPQSML*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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