Glyma20g02420 - SoyBase

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Report for Sequence Feature Glyma20g02420

Feature Type:	gene_model
Chromosome:	Gm20
Start:	2057922
stop:	2063368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49350	AT	Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein \| chr1:18265070-18267034 FORWARD LENGTH=378	SoyBase	E_val: 1.00E-142	ISS
GO:0006014	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-ribose metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribokinase activity	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2855	KOG	Ribokinase	JGI		ISS
PTHR10584	Panther	SUGAR KINASE RELATED	JGI		ISS
PTHR10584:SF15	Panther	FRUCTOKINASE-RELATED	JGI		ISS
PF00294	PFAM	pfkB family carbohydrate kinase	JGI		ISS
UniRef100_I1NDC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDC7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2MGQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carbohydrate kinase, PfkB n=1 Tax=Medicago truncatula RepID=Q2MGQ0_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g02420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g02420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g019800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g02420

Limit To All Plant Sequences

>Glyma20g02420.2   sequence type=transcript   gene model=Glyma20g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACAGAGTCTCTCAAAGGGTTATTTCCTGCTTCTCTCTCATCTATTGACTCATCCATTACCTGAACAAACACCTAGGATTTTGTCCTGTTCCCTTCATTTCATTTTCATTGGATTTATATAGCATTGCAACGATCGGATAGCTATTTGCTACTTGATTGATTCTTTGCCAGCGTGGGATTTGAGAAAGAAAAAAAAAACAGTAACAGGAAAGGAGGGTAGCATTAAGGGAAGAACTCAGGTTGCGGGAAGAGGTAAAAAAAATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAAATTTTGAATGAGGATGACTGGTAGATAAACAGCTTGAGTTGCGATACAACCACCACCTTTGCCCAGAAAAAATGATAACATCTTACAAAGGCTTGTGGCATTGAAATATGAATTAATAACTATATTTTTTTAGTTTTTATTTCATATTTTTCTATAAGAGTTTAATTGATACACTTTTTTTTAAACATTGATATGCACTTTTGCACTAACATGTTATACTTGATCATGTCATGATGTCGGTCTTTGTAGTGAATATTTTTCCCCCTAGAATCTATATTTTTACACATTTATATAGCATCA

Coding sequences of Glyma20g02420

Limit To All Plant Sequences

>Glyma20g02420.1   sequence type=CDS   gene model=Glyma20g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGATGATGCTAAATCTGTTTACTCAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA

>Glyma20g02420.2   sequence type=CDS   gene model=Glyma20g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA

Predicted protein sequences of Glyma20g02420

Limit To All Plant Sequences

>Glyma20g02420.1   sequence type=predicted peptide   gene model=Glyma20g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITDDAKSVYSGAKVLFPQSML*

>Glyma20g02420.2   sequence type=predicted peptide   gene model=Glyma20g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITGAKVLFPQSML*

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