SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35110 | AT | Annotation by Michelle Graham. TAIR10: transcription activators | chr2:14795970-14803525 REVERSE LENGTH=1396 | SoyBase | E_val: 0 | ISS |
| GO:0003002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regionalization | SoyBase | N/A | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031209 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1917 | KOG | Membrane-associated hematopoietic protein | JGI | ISS | |
| PTHR12093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12093:SF1 | Panther | MEMBRANE-ASSOCIATED PROTEIN HEM | JGI | ISS | |
| PF09735 | PFAM | Membrane-associated apoptosis protein | JGI | ISS | |
| UniRef100_E3UV65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAP1 n=1 Tax=Medicago truncatula RepID=E3UV65_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DA72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA72 related cluster n=1 Tax=unknown RepID=UPI000233DA72 | SoyBase | E_val: 0 | ISS |
|
Glyma20g02370 not represented in the dataset |
Glyma20g02370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g34620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g019300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02370.1 sequence type=CDS gene model=Glyma20g02370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGTCAAGGCAGAAGTTTTCAAACCAGGATTCTTCGTTGTCGCCTACTGCTGCAAGATCAAGGGAGTGGGATGGACCATCTAGATGGACTGATTACCTTGGGCCGGAAATGGCTTCTCCGTTGTCGTCTAGTAGCTCCAGGAATATCTATCATGATGGGCAGTCTCAGGGCACGACGCCGGCCCAATCGCACAAGGGTATCAACATGCAGTGGGTTGTCCAACTCACTGAGGTTGCCGAAGGTCTTATGGCTAAGATGTATAGGTTAAACCAACTTTTGGATTATCCAGATCCCATCAACCATGTATTTTCAGAAGGGTTTTGGAAAGCTGGTGTGTTCCCCAACCATCCCAGAATCTGCGTGTTGCTCTCTAAGAAATTTCCGGAACACTTCAGCAAATTGCAACTTGAACGTATAGATAAGATTGCTTGGGATTCATTGCAAGATCATGCAGAGCTTCATTTACAGAGCCTGGAACCGTGGGTGCAGCTACTTCTTGACTTGATGGTGTTTCGTGAACAAGCTCTGCGACTTATATTGGATCTAAGTAGTACAGTAATTACCTTGTTGCCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGATGCCAAGGAAAATGTTGCTACAGACCTATAACTTTCTACATGCAATGTCAAGAAATGAGCGGGATTGTGACTTTTATCATCGTTTGGTTCAGTTCGTTGACTCTTATGATCCACCACTGAAAGGCTTACAGGAAGACCTAAATTTTGTGAGCCCTCGTATTGGAGAGGTGTTGGAGGCTGTGGGTCCTATTATATTTCTATCAACAGACACAAGGAAACTTAGAAATGAGGGATTTTTAAGTCCATATCATCCTCGTTATCCAGACATACTCACAAATTCTGCTCATCCACTGAGAGCACAAGATCTAGCAAATGTAACTGCATATCGAGAATGGGTGTTATTTGGGTATCTTGTCTGTCCTGATGAACTGCGTCGTGTCACTAGCATTGATATTGCTTTGGTTGTACTGAAGGAAAATTTAGTGCTCACATTATTCAGAGATGAGTACATACTACTGCACGAGGATTACCAGTCATACGTTCTTCCTCGAATATTAGAATCTAAGAGGATGGCAAAATCTGGGCGTACAAAGCAAAAAGAGGCAGATTTGGAGTATAATGTTGCAAAACAGGTTGAGAAAATGATAAGTGAAGTGCATGAGCAAGCAATATTATCTTGTGATGCCATACATCGTGAAAGGAGAATTTTATTGAAACAAGAGATTGGGAGAATGGTGCTGTTTTTTACTGATCAGCCCAGCCTGTTGGCCCCTAACATTCAGATGGTGTTTTCTGCCTTGGCTTTAGCCCAATGTGAAGTGATATGGTATTTCCAACATGTAGGAATTGCATCATCAAGATCTAAAACTACTCGAGTGGTACCAGTGGACATAGATCCAAATGACCCAACAATTGGATTTCTGTTAGATGGAATGGATCATTTATGTTGCTTGGTACGCAAATACATTGCAGCAATTCGAGGTTACTCATTGTCATATCTTTCATCCTGTGCTGGAAGAATCCGTTTTTTACTAGGAACCCCTGGAATGGTGGCTCTTGATATTGAGGCTAGCTTGAAAGGACTTCTTCAGCAGATTGTTCACCACCTTGAAAACTTGCCAAAACCACAGGGTGAAAATATATCTGCTATCACTTGCGATATGTCGGATTTTCGAAAGGATTGGCTATCAATTTTATTGATAGTCACGTCTTCACGTTCATCTATAAACATTAGGCACTTGGAGAAAGCTACAGTTTCCACTGGCAAAGAAGGATTATTATCAGAAGGGAATGCTGCTTACAATTGGTCCAGATGTGTAGATGAATTGGAATCTGTGCTTTCAAAGCATGGCAGTCTTAGGAGGCTGTATTTCTACCACCAACACCTCACAGCTGTTTTTAGAAACACCATGTTTGGTCCAGAAGGGCGTCCTCAACATTGTTGTGCATGGCTTGGGATCGCTAGTAGTTTTCCAGAGTGTGCATCTTCAATTGTCCCAGAAGAGGTTACAAAAATCGGCAGGGATGCTGTTCTTTATGTTGAATCTCTGATTGAATCTATCATGGGAGGATTGGAAGGATTAATAAATATCCTTGACTCTGAAGGAGGATTTGGTGCCCTAGAGAATCAGCTTCTTCCAGAGCAAGCAGCTTCATATCTGAATCAGACATCAAGAGTTTCTATTCCATCATATAAATCTCCAAAAGGAACTGCCGGTTTTCCTTTACCTGGCCATGAGAGCTTTCCTGAAAATAATGGTTCTATCAAAATGTTAGAAGCTGCAATGCAGAGGTTGACCAATTTGTGCTCAGTTTTAAATGATATGGAGCCTATATGTGTTTTAAACCATGTCTTTGTACTGAGAGAGTACATGAGAGAATGCATTCTTGGCAACTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAACGATCTTCAACGGCCTACCGTTCTAGAATCACTGATTAAGAGACATATTAGCATCGTGCATCTTGCAGAGCAGCACATCAGCATGGACATTACCCAGGGTATTCGGGAAGTTTTGCTTTCAGAAGCCTTTTCAGGACCGGTTTCTTCTCTGCACTTGTTTGAGAAGCCAACAGATCAACATACAGGATCGGCCACTGAATCTGTATGCAATTGGTACATTGAAAACATAATCAAGGATGTTTCAGGTGCTGGGATTTTGTTTGTTCCAATTCATAAATGCTTCAGGAGTACAAGGCCAGTTGGTGGATATTTTGCAGAATCAGTCACTGATCTCAGGGAATTACAGGCTTTTGTACGTATTTTTGGTGGTTATGGCGTAGACAGGTTAGACAGAATGCTAAAAGAACACACGGCTGCTCTTTTAAATTGCATTGACACTTCACTACGCTCAAACCGAGATGTGCTAGAAGCAGTTGCTACCAGTCTGCATGCTGGTGATAGAATTGAAAGAGAAGCTTCTGTGAAGCAAATAGTTGATCTGGAAACTGTGATTGGTTTTTGTGTTCAGGCTGGCCTTGCACTGGCTTTTGATCGGCTACTAGCTGAGGCTTCTGGTGCTATACTTGAAGAAGGTGCTCCCTTGATACATTCGTTGCTGGATGGGGTGATTAAGCATCTACCTGATGGAGTACCAGAAAAGGAAGAAATCAGGAGAATGAGAACAGTGGCAAATACTGTAGGTGTTGTTAATGATCATGATTCAGTTTGGGTAAGATCAATTTTGGAGGAGGTTGGTGGTGCAAGTGATGGATCATGGGGCTTGTTACCATACTTATTTGCCACATTCATGACATCTAATATTTGGTCCACCACAGCATTTAATGTTGACACAGAGGGTTTTAGTAACAATATCCATTGCTTGGCAAGGTGCATTTCTGCAGTGATTGCCGGAAGTGAGTTTGTTAGATTGGAACGGGAACATCAGCATCGACAGTCTTTAACAAATGGACATGCTAGTGAGGGAATGGATCCCGAATTATCAAGTCATATGTCAGCCGAAGCTAGTATCAAGTCCACACTGCAGTTATTTGTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCACCGTACCTTCCAAGAAGCTCGCTGGAAACCCACGTTCCGTATGCCATTCTCCGTTCAGTATACAGCCAATACTATGCAGATACTCAGTCCACTCCATTGGCAATACTGAACGCATCACCCCGTCATTCACCTGCCGTGTTACTCGCACACGCTTCTCCTGTCTTAAGGCATCATCGTGGTGGAGACTCACCACAGTATTATGGGCACGAATCAGGATACTTCAAAGGATCGTCATCACATAACCAGGAGCACCTCTATGATGATATTGGCAGCTTAAGGAGCATGGACAACAAGCAAAGAAACGTTCGTCGTTCCGGGCCTTTGGATTACAGTGCCAGCCGTAGTAGGGTAAAGTCTGTTGAAGGCTCAACTTCTGGAAGCACTGGCCCCAGTCCACTTCCTAGGTTTGCAGTGTCTAGATCTGGTCCATTAGCGTACAAGTAG
>Glyma20g02370.1 sequence type=predicted peptide gene model=Glyma20g02370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKSRQKFSNQDSSLSPTAARSREWDGPSRWTDYLGPEMASPLSSSSSRNIYHDGQSQGTTPAQSHKGINMQWVVQLTEVAEGLMAKMYRLNQLLDYPDPINHVFSEGFWKAGVFPNHPRICVLLSKKFPEHFSKLQLERIDKIAWDSLQDHAELHLQSLEPWVQLLLDLMVFREQALRLILDLSSTVITLLPHQNSLILHAFMDLFCSFVRVNLFSEKMPRKMLLQTYNFLHAMSRNERDCDFYHRLVQFVDSYDPPLKGLQEDLNFVSPRIGEVLEAVGPIIFLSTDTRKLRNEGFLSPYHPRYPDILTNSAHPLRAQDLANVTAYREWVLFGYLVCPDELRRVTSIDIALVVLKENLVLTLFRDEYILLHEDYQSYVLPRILESKRMAKSGRTKQKEADLEYNVAKQVEKMISEVHEQAILSCDAIHRERRILLKQEIGRMVLFFTDQPSLLAPNIQMVFSALALAQCEVIWYFQHVGIASSRSKTTRVVPVDIDPNDPTIGFLLDGMDHLCCLVRKYIAAIRGYSLSYLSSCAGRIRFLLGTPGMVALDIEASLKGLLQQIVHHLENLPKPQGENISAITCDMSDFRKDWLSILLIVTSSRSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESVLSKHGSLRRLYFYHQHLTAVFRNTMFGPEGRPQHCCAWLGIASSFPECASSIVPEEVTKIGRDAVLYVESLIESIMGGLEGLINILDSEGGFGALENQLLPEQAASYLNQTSRVSIPSYKSPKGTAGFPLPGHESFPENNGSIKMLEAAMQRLTNLCSVLNDMEPICVLNHVFVLREYMRECILGNFRRRLLGVLKTDNDLQRPTVLESLIKRHISIVHLAEQHISMDITQGIREVLLSEAFSGPVSSLHLFEKPTDQHTGSATESVCNWYIENIIKDVSGAGILFVPIHKCFRSTRPVGGYFAESVTDLRELQAFVRIFGGYGVDRLDRMLKEHTAALLNCIDTSLRSNRDVLEAVATSLHAGDRIEREASVKQIVDLETVIGFCVQAGLALAFDRLLAEASGAILEEGAPLIHSLLDGVIKHLPDGVPEKEEIRRMRTVANTVGVVNDHDSVWVRSILEEVGGASDGSWGLLPYLFATFMTSNIWSTTAFNVDTEGFSNNIHCLARCISAVIAGSEFVRLEREHQHRQSLTNGHASEGMDPELSSHMSAEASIKSTLQLFVKLSADIILDSWSETHRSHLVAQLIFLDQLCEISPYLPRSSLETHVPYAILRSVYSQYYADTQSTPLAILNASPRHSPAVLLAHASPVLRHHRGGDSPQYYGHESGYFKGSSSHNQEHLYDDIGSLRSMDNKQRNVRRSGPLDYSASRSRVKSVEGSTSGSTGPSPLPRFAVSRSGPLAYK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
