Glyma20g02250 - SoyBase

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Report for Sequence Feature Glyma20g02250

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1906183
stop:	1910434
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08480	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:2684340-2685395 FORWARD LENGTH=142	SoyBase	E_val: 1.00E-68	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005749	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex II	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B4FL77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rickettsia 17 kDa surface antigen family protein n=1 Tax=Zea mays RepID=B4FL77_MAIZE	SoyBase	E_val: 4.00E-28	ISS
UniRef100_C6SXG5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXG5_SOYBN	SoyBase	E_val: 4.00E-98	ISS

Expression Patterns of Glyma20g02250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02250 not represented in the dataset	Glyma20g02250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g02250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g018300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g02250

Limit To All Plant Sequences

>Glyma20g02250.6   sequence type=transcript   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAAGCATAAATTAAATGGGCTTTGTTTTTTGTTTTTCGGAAGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGAGTAATTTTTTTATGACTAATCAGGACACTAAAAATTATGCACGCTAGTCAGAGTAAAAACCAAGTTTCACAT

>Glyma20g02250.7   sequence type=transcript   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAAGCATAAATTAAATGGGCTTTGTTTTTTGTTTTTCGGAAGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGAGTAATTTTTTTATGACTAATCAGGACACTAAAAATTATGCACGCTAGTCAGAGTAAAAACCAAGTTTCACAT

>Glyma20g02250.8   sequence type=transcript   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAAGCATAAATTAAATGGGCTTTGTTTTTTGTTTTTCGGAAGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGAGTAATTTTTTTATGACTAATCAGGACACTAAAAATTATGCACGCTAGTCAGAGTAAAAACCAAGTTTCACAT

>Glyma20g02250.9   sequence type=transcript   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAAGCATAAATTAAATGGGCTTTGTTTTTTGTTTTTCGGAAGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGAGTAATTTTTTTATGACTAATCAGGACACTAAAAATTATGCACGCTAGTCAGAGTAAAAACCAAGTTTCACAT

Coding sequences of Glyma20g02250

Limit To All Plant Sequences

>Glyma20g02250.10   sequence type=CDS   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma20g02250.6   sequence type=CDS   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma20g02250.7   sequence type=CDS   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma20g02250.8   sequence type=CDS   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma20g02250.9   sequence type=CDS   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

Predicted protein sequences of Glyma20g02250

Limit To All Plant Sequences

>Glyma20g02250.10   sequence type=predicted peptide   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma20g02250.6   sequence type=predicted peptide   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma20g02250.7   sequence type=predicted peptide   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma20g02250.8   sequence type=predicted peptide   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma20g02250.9   sequence type=predicted peptide   gene model=Glyma20g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

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