Glyma20g02231 - SoyBase

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Report for Sequence Feature Glyma20g02231

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1857323
stop:	1864105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02231

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48590	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:17962979-17964274 FORWARD LENGTH=169	SoyBase	E_val: 2.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF5	Panther	CENTAURIN/ARF-RELATED	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7JJZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD12 n=2 Tax=Medicago truncatula RepID=G7JJZ3_MEDTR	SoyBase	E_val: 5.00E-26	ISS
UniRef100_I1KM70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KM70_SOYBN	SoyBase	E_val: 6.00E-39	ISS

Expression Patterns of Glyma20g02231

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g02231 not represented in the dataset	Glyma20g02231 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g02231

Paralog	Evidence	Comments
Glyma07g34480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g02231 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g018100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02231

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g02231

Limit To All Plant Sequences

>Glyma20g02231.2   sequence type=transcript   gene model=Glyma20g02231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTGTTTGCATCTTAAAAAACGTTGCTAACTGTCCAACTTAGATTTTAGTTCAAACACGTCAAAGCTTGTATTTTTTTTGCGAATGACATTAGTTGCTTCTCTTTTATTTTTCCACTCTCTTCTTCGCGTGATTTCTTTTCCACTCCGCAATCACAAGGCATGGAGAACATTCTGGGTCTCATCAAACTTCGTATCAAAAGAGGCACTAATCTCAAAGTTTGTGATACTCGTACCTGTGACCCATATGTCTTTGTCACCATGGCCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAGCATTAATCCAGAGTGGAATGAAGAATTGACACTTTATCCAATAATGAGTGGTAATGGCTGGTAAATGCATTCTTGATGGTAGAATGCCTATATAAGCACATGAATTTGGTCCCTGAGCTCATCCCTTCGAATTCAATCTTATACACCATCTAGAGAGTAGAAAGAGAGAGAGCTTGGAAGAACCAAAACAAGAAACTCTTCATAGGAATGGCTGGAGGTATGATTTGATCTGTAATTTCCGCATTTTATTAATAACCTGTGTTTCTTTGTAGTTTGT

Coding sequences of Glyma20g02231

Limit To All Plant Sequences

>Glyma20g02231.1   sequence type=CDS   gene model=Glyma20g02231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACATTCTGGGTCTCATCAAACTTCGTATCAAAAGAGGCACTAATCTCAAAGTTTGTGATACTCGTACCTGTGACCCATATGTCTTTGTCACCATGGCCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAGCATTAATCCAGAGTGGAATGAAGAATTGACACTTTATGTAAGCAATGTTAATATTCCCGTACATCTGGTGAGTACTGAATGA

>Glyma20g02231.2   sequence type=CDS   gene model=Glyma20g02231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACATTCTGGGTCTCATCAAACTTCGTATCAAAAGAGGCACTAATCTCAAAGTTTGTGATACTCGTACCTGTGACCCATATGTCTTTGTCACCATGGCCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAGCATTAATCCAGAGTGGAATGAAGAATTGACACTTTATCCAATAATGAGTGGTAATGGCTGGTAA

Predicted protein sequences of Glyma20g02231

Limit To All Plant Sequences

>Glyma20g02231.1   sequence type=predicted peptide   gene model=Glyma20g02231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENILGLIKLRIKRGTNLKVCDTRTCDPYVFVTMAEQKLKTGVVKDSINPEWNEELTLYVSNVNIPVHLVSTE*

>Glyma20g02231.2   sequence type=predicted peptide   gene model=Glyma20g02231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENILGLIKLRIKRGTNLKVCDTRTCDPYVFVTMAEQKLKTGVVKDSINPEWNEELTLYPIMSGNGW*

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