Glyma20g01960 - SoyBase

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Report for Sequence Feature Glyma20g01960

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1475786
stop:	1485655
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7J8D2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RWP-RK domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J8D2_MEDTR	SoyBase	E_val: 7.00E-30	ISS
UniRef100_I1ND88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ND88_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g01960

Paralog	Evidence	Comments
Glyma06g05761	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma20g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g01960

Limit To All Plant Sequences

>Glyma20g01960.1   sequence type=CDS   gene model=Glyma20g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATGACGACGACAACAACTCCTCCTCCCGGTTTGTTCCGTACACGTGTCGAGATCCATTTGTCAGCCCACTTCTCGATAACTTTTTTATCGAACCGGACCCTGCACCCGAACCGAACCTACAAAATGATGAACAGCAATCCCTGCAGGGTGGTTATGTTTCCTCCACGGGTTCAACGATCCAAGATCAATCCCAGCAGCATTTTTGCAATGACAATTTTACCATTGGTGGAGGAGGAGTTCCTAACTACCAAGTAGCGGGGTCTTCCAAGAACAAGCGTACATATCCCTTCACTGATGTGGATATTGAACATCAATCCTTCAGGTATGACTTTAAAGCGGGTCCATCCAATCTGAATCAGCCTGAAAGTGGGATTATGGATTGGCCTCCTGTGCCAAGGCCATTCTTTTGCACTTGCTGCCAAGTTCTAAGACAGACAATTCACACCAATGGTAATGATCTTGAGAGACTTGAAATACATGGGAGGATAGGGTTGATCAACCATATAATAATTCAGAATCAGAGTATTACGCCGGGTGATCCTCCATGTGACAATTATGATCAAATGATTGATTTCACCAACGGAACCCCTGCAGAAGTTAAGGGTTTCCTTGAAGATTACATTGCGCAGAAGGATAAATTAGGGTACATTATTGTGGAAGAAGCTTTTTCTGCGTTTTATGAAGCCCTCTGCACCAAATTAGATTGGGTTGGAAAACGCACTAATAACGAAGACGATGATTTGATTCCACCAAATTTGGAGAAAGAAGGACCTGAGGCTGAGCCTGAGAAAAGAAGGCATAAACGTAGTCGCAAAGATCAGGTTATTGATAGAGCCACCAGTGCAGCAAACGCCGTAGATACCACATTAACACCAGAAGGAGCACGTGCAGAAAGGCTAAAGAGGAACGTTTTGCGACCCAAACACTTAGACGATTACTCCGATAGGATAAATAATATGACATTGAATGATTTGAGTGGCGTGTTCCACATAACTATGAAGGCTGCAAAGGATGTCTTAGAAATGTCTGTTACTTTGCTACCCCTTGCGAGGAGGTTGAAAGTGCTCAAAAGAGCATTAGAATCTTCACAAGATCCAGTGATAATACAGACAACTAGCATGGAGGTTCGAAGAATTAAACAAGAAATGACTCAGTTGTGTGGTGGAGTTACCCCAACGGGTATAGAAATTCCTGAAGTTAATTGTTACCCTTTTCCTCCTATTCTCTCTCCTTTTCTTCCCTTCTTTCTTCTCTCTGATGTTGAAGACCAACGTTGTCGCTGCCAGAACATTTTGACACTTCACGGTGAGTCCGTCATCGCTAACGGCGTCAGCAGCCACACGTTTTTTGTTGAGGGCAGTTGCAGTGGTGTCGCTTCTGCCGCAAGCTTCGGTGCGAGACGCCAATTGAGAGTCATGTCCTTCAATGCCACCACCGCATCGTCTGTTTCCTCCAGATCTAAGCTTTTCTTTTTTTTCAAATTTGAGGTTGGTGATAAAGAATAG

Predicted protein sequences of Glyma20g01960

Limit To All Plant Sequences

>Glyma20g01960.1   sequence type=predicted peptide   gene model=Glyma20g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDDDDNNSSSRFVPYTCRDPFVSPLLDNFFIEPDPAPEPNLQNDEQQSLQGGYVSSTGSTIQDQSQQHFCNDNFTIGGGGVPNYQVAGSSKNKRTYPFTDVDIEHQSFRYDFKAGPSNLNQPESGIMDWPPVPRPFFCTCCQVLRQTIHTNGNDLERLEIHGRIGLINHIIIQNQSITPGDPPCDNYDQMIDFTNGTPAEVKGFLEDYIAQKDKLGYIIVEEAFSAFYEALCTKLDWVGKRTNNEDDDLIPPNLEKEGPEAEPEKRRHKRSRKDQVIDRATSAANAVDTTLTPEGARAERLKRNVLRPKHLDDYSDRINNMTLNDLSGVFHITMKAAKDVLEMSVTLLPLARRLKVLKRALESSQDPVIIQTTSMEVRRIKQEMTQLCGGVTPTGIEIPEVNCYPFPPILSPFLPFFLLSDVEDQRCRCQNILTLHGESVIANGVSSHTFFVEGSCSGVASAASFGARRQLRVMSFNATTASSVSSRSKLFFFFKFEVGDKE*

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