Glyma20g01895 - SoyBase

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Report for Sequence Feature Glyma20g01895

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1422676
stop:	1427092
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g01895

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15920	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr4:9030742-9033343 REVERSE LENGTH=241	SoyBase	E_val: 3.00E-31	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_Q84WN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bidirectional sugar transporter SWEET17 n=1 Tax=Arabidopsis thaliana RepID=SWT17_ARATH	SoyBase	E_val: 2.00E-28	ISS
UniRef100_UPI0002338D52	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338D52 related cluster n=1 Tax=unknown RepID=UPI0002338D52	SoyBase	E_val: 1.00E-60	ISS

Expression Patterns of Glyma20g01895

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g01895 not represented in the dataset	Glyma20g01895 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g01895 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g015700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g01895

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g01895

Limit To All Plant Sequences

>Glyma20g01895.1   sequence type=CDS   gene model=Glyma20g01895   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGAGATGCGGTGCAAGTCATATCTGGACGAGAAAGGGGTCCTTTTCTTTGTGGAGTTGTTTGTGCTGCTACCACACACAAAGGTCATTTCAATAACTATAGTAATTCCATTTTCTGCGGTGCAGTTGTCATCCCAAGGGCCAACACATGATGAGATTGATTTCGAGTTTTTGCGAAACCTAAGTGGAGACCCTTATATTCTCCGCACAAACATCTTCACCCAAGGCAAAGGATGCAGACCTACGTTTTGGAAAATAAAGAAGCACGAATCTACGGAAGATTTCTCGAGCCTTCCTTACATTTGCACATTGCTTAATTGCTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTATCTCGTGGCTACTGTCAATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGGACTGCCATTTTGGCTGTGATTTTGGATGTCGCAATTTCGGCAGAAGCAGTAACTACTTCTCAATTAGCATTGCAAGGAGAAGCTCATGGTGGTGCTGTTGGTGTTATGGGAGCAGGCTAA

Predicted protein sequences of Glyma20g01895

Limit To All Plant Sequences

>Glyma20g01895.1   sequence type=predicted peptide   gene model=Glyma20g01895   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEMRCKSYLDEKGVLFFVELFVLLPHTKVISITIVIPFSAVQLSSQGPTHDEIDFEFLRNLSGDPYILRTNIFTQGKGCRPTFWKIKKHESTEDFSSLPYICTLLNCSLWTYYGIIKAREYLVATVNGFGIVVETIYVILFLIYAPKGIRGRTAILAVILDVAISAEAVTTSQLALQGEAHGGAVGVMGAG*

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