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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31790 | AT | Annotation by Michelle Graham. TAIR10: Tetrapyrrole (Corrin/Porphyrin) Methylases | chr4:15377479-15378530 FORWARD LENGTH=277 | SoyBase | E_val: 8.00E-164 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0017183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004164 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diphthine synthase activity | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG3123 | KOG | Diphthine synthase | JGI | ISS | |
| PTHR10882 | Panther | DIPHTHINE SYNTHASE | JGI | ISS | |
| PF00590 | PFAM | Tetrapyrrole (Corrin/Porphyrin) Methylases | JGI | ISS | |
| UniRef100_G7J4Q4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diphthine synthase n=1 Tax=Medicago truncatula RepID=G7J4Q4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001D163EA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D163EA related cluster n=1 Tax=unknown RepID=UPI0001D163EA | SoyBase | E_val: 0 | ISS |
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Glyma20g01730 not represented in the dataset |
Glyma20g01730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g34130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g014100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g01730.4 sequence type=transcript gene model=Glyma20g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTAATATTGGGTTGGGCCTCAGGTCCAGAAAGCGAAACCCGACCCAACCTATAAAGAAAATTACTGAAATTTATCACACTCGTAACACCGTTGTTCGAAACTTCAAATCAAAAAAAGCTCAGAGAACCCATCCCGCCGCCGCCGTGTACTCCGACCGCCACCTCCATTCGCCGATGTACTCTCAATCCCTTGGTAATTATTGATTTCTTCTATTATCCTTTGAGTTAAAGTCGAAGGAGTGCGATTATTCTGATTTGAGAAGCAAAAATACCAAAGAGTGAAGAAAAGAAAAGAAAAAATGCTGTACATAATTGGTTTAGGGTTGGGTGATGAGCAAGACATCACTCTCAAAGGCTTGGAAGCTGTGAAGAAGTGCAGCAAGGTTTACATGGAAGCCTACACTTCCCTCCTCTCCTTTGGTCTCTCCACCAATGGCATCTCCAACCTGAGAAATGGTAGAAGAAAAGGCTGATGAAATTCTCTCTGAAGCTGATCATGCCCATGTTGCTTTCCTTGTTGTTGGGGATCCTTTTGGGGCTACCACTCACACTGACCTGGTTGTTCGAGCAAAGAAGATGGCAATTGAAGTCAAAGTAGTACACAATGCATCTGTGATGAATGCTATTGGAGTTTGTGGTCTACAGCTTTACCGTTATGGGGAGACCGTTTCTATACCATTCTTTACAGAGACTTGGAGACCTGATAGCTTCTATGAAAAGATTCAAAGAAACCTATCAATGGGACTGCACACGCTTTGCTTGTTAGATATTCGTGTGAAGGAACCCACACTAGAATCTTTGTGCAGAGGAAGAAAAGCTTATGAACCACCCAGATATATGACAATAAACACAGCCATTGAGCAGCTCTTGGAGATTGTGCAAGCACGTGAAGAACCTGCATATACTGAGGATACCGAGTGTGTTGGGCTTGCACGGCTTGGGAGTGAAGATCAGATGATAGTAGCTGGAACAATGAAGCAGTTGCAGATGGTTGATTTTGGAGCACCTTTGCATTGCCTTGTTATAACAGGCCAGACCCATCCTGTGGAGGAAGAAATGCTGTATTTTTACAGATGCAGGACATCGATACAACATTAAGACAGCAGCACCAGTTTAATTTAGCAAAAAAGACTTGTTTGTTTCTTTTGAAGGAACCCTTGTATTTTTGTTCTTCCTGTAAAAACTTTTTGGTTGCTAATCAGGGCCAAAATTTAACTAAATTCATTGGTGGCTGAAAAATTATGGGTAGCGGGCTTTGAAGAACTAGGTTTTGAAATATTGTTGTGCATGCTGCTTATGGTCTGTTTGGTAGAGGCAAAAGATGGTAGAAAAGGAGTAAAACGAATACTAAAAATTTGTGGAGACTTTTACTCTATTTTAATTTAAAATTTTCATTTCTT
>Glyma20g01730.3 sequence type=CDS gene model=Glyma20g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTACATAATTGGTTTAGGGTTGGGTGATGAGCAAGACATCACTCTCAAAGGCTTGGAAGCTGTGAAGAAGTGCAGCAAGGTTTACATGGAAGCCTACACTTCCCTCCTCTCCTTTGGTCTCTCCACCAATGGCATCTCCAACCTGGAAAAACTATACGGTAAACCCATTATTCTTGCTGACAGAGAAATGGTAGAAGAAAAGGCTGATGAAATTCTCTCTGAAGCTGATCATGCCCATGTTGCTTTCCTTGTTGTTGGGGATCCTTTTGGGGCTACCACTCACACTGACCTGGTTGTTCGAGCAAAGAAGATGGCAATTGAAGTCAAAGTAGTACACAATGCATCTGTGATGAATGCTATTGGAGTTTGTGGTCTACAGCTTTACCGTTATGGGGAGACCGTTTCTATACCATTCTTTACAGAGACTTGGAGACCTGATAGCTTCTATGAAAAGATTCAAAGAAACCTATCAATGGGACTGCACACGCTTTGCTTGTTAGATATTCGTGTGAAGGAACCCACACTAGAATCTTTGTGCAGAGGAAGAAAAGCTTATGAACCACCCAGATATATGACAATAAACACAGCCATTGAGCAGCTCTTGGAGATTGTGCAAGCACGTGAAGAACCTGCATATACTGAGGATACCGAGTGTGTTGGGCTTGCACGGCTTGGGAGTGAAGATCAGATGATAGTAGCTGGAACAATGAAGCAGTTGCAGATGGTTGATTTTGGAGCACCTTTGCATTGCCTTGTTATAACAGGCCAGACCCATCCTGTGGAGGAAGAAATGCTGTATTTTTACAGATGCAGGACATCGATACAACATTAA >Glyma20g01730.4 sequence type=CDS gene model=Glyma20g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGAAGAAAAGGCTGATGAAATTCTCTCTGAAGCTGATCATGCCCATGTTGCTTTCCTTGTTGTTGGGGATCCTTTTGGGGCTACCACTCACACTGACCTGGTTGTTCGAGCAAAGAAGATGGCAATTGAAGTCAAAGTAGTACACAATGCATCTGTGATGAATGCTATTGGAGTTTGTGGTCTACAGCTTTACCGTTATGGGGAGACCGTTTCTATACCATTCTTTACAGAGACTTGGAGACCTGATAGCTTCTATGAAAAGATTCAAAGAAACCTATCAATGGGACTGCACACGCTTTGCTTGTTAGATATTCGTGTGAAGGAACCCACACTAGAATCTTTGTGCAGAGGAAGAAAAGCTTATGAACCACCCAGATATATGACAATAAACACAGCCATTGAGCAGCTCTTGGAGATTGTGCAAGCACGTGAAGAACCTGCATATACTGAGGATACCGAGTGTGTTGGGCTTGCACGGCTTGGGAGTGAAGATCAGATGATAGTAGCTGGAACAATGAAGCAGTTGCAGATGGTTGATTTTGGAGCACCTTTGCATTGCCTTGTTATAACAGGCCAGACCCATCCTGTGGAGGAAGAAATGCTGTATTTTTACAGATGCAGGACATCGATACAACATTAA
>Glyma20g01730.3 sequence type=predicted peptide gene model=Glyma20g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLYIIGLGLGDEQDITLKGLEAVKKCSKVYMEAYTSLLSFGLSTNGISNLEKLYGKPIILADREMVEEKADEILSEADHAHVAFLVVGDPFGATTHTDLVVRAKKMAIEVKVVHNASVMNAIGVCGLQLYRYGETVSIPFFTETWRPDSFYEKIQRNLSMGLHTLCLLDIRVKEPTLESLCRGRKAYEPPRYMTINTAIEQLLEIVQAREEPAYTEDTECVGLARLGSEDQMIVAGTMKQLQMVDFGAPLHCLVITGQTHPVEEEMLYFYRCRTSIQH* >Glyma20g01730.4 sequence type=predicted peptide gene model=Glyma20g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEEKADEILSEADHAHVAFLVVGDPFGATTHTDLVVRAKKMAIEVKVVHNASVMNAIGVCGLQLYRYGETVSIPFFTETWRPDSFYEKIQRNLSMGLHTLCLLDIRVKEPTLESLCRGRKAYEPPRYMTINTAIEQLLEIVQAREEPAYTEDTECVGLARLGSEDQMIVAGTMKQLQMVDFGAPLHCLVITGQTHPVEEEMLYFYRCRTSIQH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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