|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G20693 | AT | Annotation by Michelle Graham. TAIR10: high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142 | SoyBase | E_val: 2.00E-22 | ISS |
GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0000785 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0030527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of chromatin | SoyBase | N/A | ISS |
PTHR13711 | Panther | SWI/SNF-RELATED CHROMATIN BINDING PROTEIN | JGI | ISS | |
PTHR13711:SF70 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF00505 | PFAM | HMG (high mobility group) box | JGI | ISS | |
UniRef100_I1ND62 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1ND62_SOYBN | SoyBase | E_val: 2.00E-37 | ISS |
UniRef100_P93704 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HMG-1 n=1 Tax=Canavalia gladiata RepID=P93704_CANGL | SoyBase | E_val: 6.00E-26 | ISS |
Glyma20g01570 not represented in the dataset |
Glyma20g01570 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g012800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g01570.1 sequence type=CDS gene model=Glyma20g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGGTAAAGCTGGTGGTGACAAATGGAAATCGCTGTCTGATGCTGAAAAGGCCCCCTTCGTTGCTACGGCCGAAAAGAAGAAACAAGAGTATGAGAAAACTATTTTGGCTTACAATAAGAAATTGGAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGGTAGATTGA
>Glyma20g01570.1 sequence type=predicted peptide gene model=Glyma20g01570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKKLEGKNSEEDESDKSKSEVNDDEEDEVD*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||