Glyma20g01520 - SoyBase

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Report for Sequence Feature Glyma20g01520

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1035425
stop:	1039183
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g01520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14720	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 28 \| chr1:5066806-5068466 REVERSE LENGTH=332	SoyBase	E_val: 1.00E-158	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0010154	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit development	SoyBase	N/A	ISS
GO:0080086	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen filament development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI		ISS
UniRef100_A2TEJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglycosylase/hydrolase XTH-39 n=1 Tax=Populus tremula RepID=A2TEJ2_POPTN	SoyBase	E_val: 1.00E-180	ISS
UniRef100_I1ND56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ND56_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g01520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g01520

Paralog	Evidence	Comments
Glyma07g27990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g01520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g012300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g01520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g01520

Limit To All Plant Sequences

>Glyma20g01520.2   sequence type=transcript   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAGCTTGCTTGTAAATAATGCGTTATGAGAACAAAAAAGGAAAGCATATTGCTTTCAGTTTCGTTTTCTTCATGAGGTTACTAATGGGGACAAAAAAAGATTAATTTTTTTTCCTGTTTTTAAGGGAAACTCCAATGTTTGTTTGTATTATTGAAATGAAAACGCCAATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACATTGTATGCCACCATATGGGATGCTTCAGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCTAGGTTCTGAAGAAGTTCCCTCTGGTGTCACCCAAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAGGCACATGACATATTCTTACTGCTATGACACTGTTAGATACAAAGTCCCTCCACCGGAGTGTGTCATCAGCCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCATAACGTTCGGCAATGGCCGGCGCCACCGTGGTAAACGACACCACCATAGTAGTAGAGGAAGCCAAGAAGAGATTACTGCTTCTTCATTTTAATGTATGGTTCCATATGCAGAATTTGTCATAAAGGAAATATTTTCATATAATGAATCAGTTTGATTTACCTGGGTTACAAACAATATGTCTTTTGATCAATGATGTTTTTTAGTCCGTGAAAAATGAGTCATTTTTTTTTGTTAGTCCCTAACTTTTAAAACCATAAGTTTTGGTCCCCTTCACTATTAGCTTTAAGACTAAAGTTTGTGTATTTAAAAAATATAGGGATGAAAACTTATGGTTTTAAAAGTAAAGGACTAAAACCCAATATGACTCGTTTTTTCAGGGACTAAAAATATCATTAACTTGATATCTTTTTTTTCCTTTATCCTTTCATTTTGGTGTAGAGAGAGAGAGAGGGGTTTGGACATAGAAGTCCTTAATATGTTAGTTTATGATATGGTTCTTGCTGGTGGGTTTTTGTATAGTCCTTCATTCCTCTAGGTTCCTGGGTATTTCCTCATTGATGTCCTATGCTACTTTACAAATTGAACCTCTTCATTGATGATTTATGTATGTGGAGACACACCCCAGGGTTTCAATAAACTAGTATTTATTTTATTATGAGGAGGAGTGATTTAATGAGTGTTAGGTATGAATTATTTTAGTGTTGGTATGCCACATCCAGTATGAAACCAACCAAAATGACTTTTATATTTAGTCCATGACTGGTACTGAGGTGTGTTTGGACTGTCTGGAAAATTACATGGTCAGATTTGTCAGCTTGAGGACACAAAATGTGGCCATTTTGTCAAGGTAATTGGAATCCAAAGTCAAGTCTTGAATGTGACAAATACTGCAGGCTGGTTAGTTTACTGGTGCTTTCATTAAATAGTGTGACCAAAATTTCTCTCTCCACTTTTTCTTTCCCATGCTTTTGTCTTCTGG

>Glyma20g01520.3   sequence type=transcript   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTAATATGACCACAATAGAATTGTGTGGGGATGGAAACTAAAAATGAAAGGGAAAGAAAAGAAAAATAAAATAAAATTGCCCGCATATAATAATATTCCAACATCTCTAACTCTCAACACAGCACAGCACATTCCCAACTCCCAAGTCTCGCCAATAAAACGTTATATTCCAACCTCTCTCTCTCATCCCCTGCTATTCTTCTTCATCACTCTTCTCTTCTCTCTTAATATAATAATATTACCAACACAACACAACACTCACAAAAACAGCAGACAAGTAGCCAGAACAAGAAATCCTTTGACACATGACACATTAATCACTTTCTTTAAGGAAACTAATTAACATGGGAGGAAGGGGTCACATGGGGTGGTTCCTCTTCTGTTGTTGTTCTTCTTCTCTCCTTTTTTTTGTTGCTTCTTCTTCTTCTGTGTCACCCAGAAGAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACACCCTTGTTTGGTGACCATAATTTGGCCATCCATAGAGATGGCAAATCAGTTCACCTTTCACTTGATGAAAGAACAGTGCCTCGATCAAGTTGCCTGCCGATTACACTGCTGGAGTTGTGGTCGCATTTTATATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACATTGTATGCCACCATATGGGATGCTTCAGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCTAGGTTCTGAAGAAGTTCCCTCTGGTGTCACCCAAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAGGCACATGACATATTCTTACTGCTATGACACTGTTAGATACAAAGTCCCTCCACCGGAGTGTGTCATCAGCCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCATAACGTTCGGCAATGGCCGGCGCCACCGTGGTAAACGACACCACCATAGTAGTAGAGGAAGCCAAGAAGAGATTACTGCTTCTTCATTTTAATGTATGGTTCCATATGCAGAATTTGTCATAAAGGAAATATTTTCATATAATGAATCAGTTTGATTTACCTGGGTTACAAACAATATGTCTTTTGATCAATGATGTTTTTTAGTCCGTGAAAAATGAGTCATTTTTTTTTGTTAGTCCCTAACTTTTAAAACCATAAGTTTTGGTCCCCTTCACTATTAGCTTTAAGACTAAAGTTTGTGTATTTAAAAAATATAGGGATGAAAACTTATGGTTTTAAAAGTAAAGGACTAAAACCCAATATGACTCGTTTTTTCAGGGACTAAAAATATCATTAACTTGATATCTTTTTTTTCCTTTATCCTTTCATTTTGGTGTAGAGAGAGAGAGAGGGGTTTGGACATAGAAGTCCTTAATATGTTAGTTTATGATATGGTTCTTGCTGGTGGGTTTTTGTATAGTCCTTCATTCCTCTAGGTTCCTGGGTATTTCCTCATTGATGTCCTATGCTACTTTACAAATTGAACCTCTTCATTGATGATTTATGTATGTGGAGACACACCCCAGGGTTTCAATAAACTAGTATTTATTTTATTATGAGGAGGAGTGATTTAATGAGTGTTAGGTATGAATTATTTTAGTGTTGGTATGCCACATCCAGTATGAAACCAACCAAAATGACTTTTATATTTAGTCCATGACTGGTACTGAGGTGTGTTTGGACTGTCTGGAAAATTACATGGTCAGATTTGTCAGCTTGAGGACACAAAATGTGGCCATTTTGTCAAGGTAATTGGAATCCAAAGTCAAGTCTTGAATGTGACAAATACTGCAGGCTGGTTAGTTTACTGGTGCTTTCATTAAATAGTGTGACCAAAATTTCTCTCTCCACTTTTTCTTTCCCATGCTTTTGTCTTCTGG

Coding sequences of Glyma20g01520

Limit To All Plant Sequences

>Glyma20g01520.1   sequence type=CDS   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAGGGGTCACATGGGGTGGTTCCTCTTCTGTTGTTGTTCTTCTTCTCTCCTTTTTTTTGTTGCTTCTTCTTCTTCTGTGTCACCCAGAAGAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACACCCTTGTTTGGTGACCATAATTTGGCCATCCATAGAGATGGCAAATCAGTTCACCTTTCACTTGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGACCTTTACCTTCACGGGTATTTCAGTGCCTCGATCAAGTTGCCTGCCGATTACACTGCTGGAGTTGTGGTCGCATTTTATATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACATTGTATGCCACCATATGGGATGCTTCAGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCTAGGTTCTGAAGAAGTTCCCTCTGGTGTCACCCAAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAGGCACATGACATATTCTTACTGCTATGACACTGTTAGATACAAAGTCCCTCCACCGGAGTGTGTCATCAGCCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCATAACGTTCGGCAATGGCCGGCGCCACCGTGGTAAACGACACCACCATAGTAGTAGAGGAAGCCAAGAAGAGATTACTGCTTCTTCATTTTAA

>Glyma20g01520.2   sequence type=CDS   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTTTGTATTATTGAAATGAAAACGCCAATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACATTGTATGCCACCATATGGGATGCTTCAGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCTAGGTTCTGAAGAAGTTCCCTCTGGTGTCACCCAAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAGGCACATGACATATTCTTACTGCTATGACACTGTTAGATACAAAGTCCCTCCACCGGAGTGTGTCATCAGCCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCATAACGTTCGGCAATGGCCGGCGCCACCGTGGTAAACGACACCACCATAGTAGTAGAGGAAGCCAAGAAGAGATTACTGCTTCTTCATTTTAA

>Glyma20g01520.3   sequence type=CDS   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCATTGGTAGAGAGGAAAGATATGGCTTATGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTTTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCTTCAAAGCCAATGACATTGTATGCCACCATATGGGATGCTTCAGATTGGGCAACCAATGGAGGCAAATATAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTGGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCTAGGTTCTGAAGAAGTTCCCTCTGGTGTCACCCAAGTACAAATAACCAAAATGAGAAACTTCAGGTTGAGGCACATGACATATTCTTACTGCTATGACACTGTTAGATACAAAGTCCCTCCACCGGAGTGTGTCATCAGCCACCAAGAAGCTGAAAGGCTTAGAAAATTTGATCCCATAACGTTCGGCAATGGCCGGCGCCACCGTGGTAAACGACACCACCATAGTAGTAGAGGAAGCCAAGAAGAGATTACTGCTTCTTCATTTTAA

Predicted protein sequences of Glyma20g01520

Limit To All Plant Sequences

>Glyma20g01520.1   sequence type=predicted peptide   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRGHMGWFLFCCCSSSLLFFVASSSSVSPRRNLPIIAFEDGYTPLFGDHNLAIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDSALGSEEVPSGVTQVQITKMRNFRLRHMTYSYCYDTVRYKVPPPECVISHQEAERLRKFDPITFGNGRRHRGKRHHHSSRGSQEEITASSF*

>Glyma20g01520.2   sequence type=predicted peptide   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVCIIEMKTPMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDSALGSEEVPSGVTQVQITKMRNFRLRHMTYSYCYDTVRYKVPPPECVISHQEAERLRKFDPITFGNGRRHRGKRHHHSSRGSQEEITASSF*

>Glyma20g01520.3   sequence type=predicted peptide   gene model=Glyma20g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDSALGSEEVPSGVTQVQITKMRNFRLRHMTYSYCYDTVRYKVPPPECVISHQEAERLRKFDPITFGNGRRHRGKRHHHSSRGSQEEITASSF*

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