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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74700 | AT | Annotation by Michelle Graham. TAIR10: tRNAse Z1 | chr1:28065345-28067130 FORWARD LENGTH=280 | SoyBase | E_val: 2.00E-158 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA processing | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0042780 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA 3'-end processing | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0042781 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-tRNA processing endoribonuclease activity | SoyBase | N/A | ISS |
| PTHR12553 | Panther | ELAC RELATED | JGI | ISS | |
| PTHR12553:SF4 | Panther | gb def: hypothetical protein [dictyostelium discoideum] | JGI | ISS | |
| PF00753 | PFAM | Metallo-beta-lactamase superfamily | JGI | ISS | |
| UniRef100_I1ND53 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ND53_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8LGU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear ribonuclease Z n=2 Tax=Arabidopsis thaliana RepID=RNZN_ARATH | SoyBase | E_val: 7.00E-156 | ISS |
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Glyma20g01480 not represented in the dataset |
Glyma20g01480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g012000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g01480.2 sequence type=transcript gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAGTTTGAAGTATCAATATCAAATTATAGAGCTTTTGATCACGTTTGGTTGAAAATATATAAACTAAAAACATATTTTTCACTTAAATTAATTATCGATTCATATCATAATAATAAACAATAACTTCTCATTCAGAGGGGTTAGAATAGAACTTTATAACATGCATCATCATTGCCATCTCTCTTATAAACTTATGCATTGATAGTATTTTTTGATTTTTTATACCAATAAAATTGTTAGTATTACTATATGTATAAATTTTCAATGTTTATACTAATAAAAGGCTATAATTTAATTTAACCCTCCCCCGGTAACTAGTACTTCTTCTTTGTTGTTGTTGTTGTTTTATAGTTCATTAGAATGTTAGTTTTGTTACTATCCCCTTTTGTTGCAAATTTTGGATTTTGATTGCAGGTGGGGATTCTGTGGCCAAAAGGGTGATTGGGTTTGTGGCAAAGGCCACCTTGAATTCCGTTGAGGGCATTTTGGCTAACAACAAGTCCAACAACAACCCCATTGCTGTTATTGACAACCATGACAGCTTCACCTGTAATCTCTGCCCAGAAATCAGATTTTGGTGTGGCGGCGTGCATAGCGACTTCCCTGGCAGAGAAATTCAAGAGCCCAAGCAAGCATTAAGCACGTTGTCGCTTCGGTCTCGTCGGACTCTGTCTTTGTTCATTGGAGCCGGGAACTGAGCAATCAATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCCATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGAGTCCCTGACAAGTTGGGAGTTTGGTTGATACATAAAAATGACTATGGAGCTGTTTTTGCCTCCTCCAAACCCACCTGAGACTATTGGACGCAGTTAGAATGTACTGTCATCATTGATGACAAATGTGGGAGAAGTGGAGTGCAAAGCCTAATCCACTGATGCATAGTGTGTTTGGATTACCATATGAATCACCAAAAACGTTTATTTGCACATTTCAAGAGAGAAAACGGAGAAGCAACACCAGTGTTTCGTTGAATATAATGTATGTTTGCGTTGGAACGAACCATTTTCCAAACATACACTATCACTCTATCAGCTACCTTCTTTATTAAGTTGTTTCTAGTAATATCTTCTTTATTAAG >Glyma20g01480.3 sequence type=transcript gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAGTTTGAAGTATCAATATCAAATTATAGAGCTTTTGATCACGTTTGGTTGAAAATATATAAACTAAAAACATATTTTTCACTTAAATTAATTATCGATTCATATCATAATAATAAACAATAACTTCTCATTCAGAGGGGTTAGAATAGAACTTTATAACATGCATCATCATTGCCATCTCTCTTATAAACTTATGCATTGATAGTATTTTTTGATTTTTTATACCAATAAAATTGTTAGTATTACTATATGTATAAATTTTCAATGTTTATACTAATAAAAGGCTATAATTTAATTTAACCCTCCCCCGGTAACTAGTACTTCTTCTTTGTTGTTGTTGTTGTTTTATAGTTCATTAGAATGTTAGTTTTGTTACTATCCCCTTTTGTTGCAAATTTTGGATTTTGATTGCAGGTGGGGATTCTGTGGCCAAAAGGGTGATTGGGTTTGTGGCAAAGGCCACCTTGAATTCCGTTGAGGGCATTTTGGCTAACAACAAGTCCAACAACAACCCCATTGCTGTTATTGACAACCATGACAGCTTCACCTGTAATCTCTGCCCAGTTCATTGGAGCCGGGAACTGAGCAATCAATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCCATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGAGTCCCTGACAAGTTGGGAGTTTGGTTGATACATAAAAATGACTATGGAGCTGTTTTTGCCTCCTCCAAACCCACCTGAGACTATTGGACGCAGTTAGAATGTACTGTCATCATTGATGACAAATGTGGGAGAAGTGGAGTGCAAAGCCTAATCCACTGATGCATAGTGTGTTTGGATTACCATATGAATCACCAAAAACGTTTATTTGCACATTTCAAGAGAGAAAACGGAGAAGCAACACCAGTGTTTCGTTGAATATAATGTATGTTTGCGTTGGAACGAACCATTTTCCAAACATACACTATCACTCTATCAGCTACCTTCTTTATTAAGTTGTTTCTAGTAATATCTTCTTTATTAAG
>Glyma20g01480.1 sequence type=CDS gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCCATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGA >Glyma20g01480.2 sequence type=CDS gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCCATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGA >Glyma20g01480.3 sequence type=CDS gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCCATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGA
>Glyma20g01480.1 sequence type=predicted peptide gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRKDLKVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTGDTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAILLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF* >Glyma20g01480.2 sequence type=predicted peptide gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRKDLKVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTGDTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAILLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF* >Glyma20g01480.3 sequence type=predicted peptide gene model=Glyma20g01480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRKDLKVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTGDTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAILLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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