SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33150 | AT | Annotation by Michelle Graham. TAIR10: peroxisomal 3-ketoacyl-CoA thiolase 3 | chr2:14047814-14050983 REVERSE LENGTH=462 | SoyBase | E_val: 0 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009789 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010111 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glyoxysome organization | SoyBase | N/A | ISS |
| GO:0019395 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid oxidation | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003988 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA C-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| KOG1389 | KOG | 3-oxoacyl CoA thiolase | JGI | ISS | |
| PTHR18919 | Panther | ACETYL-COA C-ACYLTRANSFERASE | JGI | ISS | |
| PTHR18919:SF15 | Panther | 3-KETOACYL-COA THIOLASE B (BETA- KETOTHIOLASE B) (ACETYL-COA ACYLTRANSFERASE B) (PEROXISOMAL 3-OXOACYL- COA THIOLASE B) | JGI | ISS | |
| PF00108 | PFAM | Thiolase, N-terminal domain | JGI | ISS | |
| PF02803 | PFAM | Thiolase, C-terminal domain | JGI | ISS | |
| UniRef100_Q6TXD0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA thiolase n=1 Tax=Glycine max RepID=Q6TXD0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6TXD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: 3-ketoacyl-CoA thiolase n=1 Tax=Glycine max RepID=Q6TXD0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma20g01180 not represented in the dataset |
Glyma20g01180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g29670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g009100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g01180.2 sequence type=transcript gene model=Glyma20g01180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTATTTTAAAGTTAATTTTTCAGATTTGAAGAAACTCACCCAACATTATTCAAAGATGAATAATAAGTTTATTCAGTGAAGACATGACCCTTTTGAAGTCAATTTGTCCCTTTGCATCACATTCACTCGCACAACACAGTACAGGAGCTCAAATATGGATAAAGCAATTCAAAGACAGAGAGTCCTGCTTGATCATCTTCAACCCATTTCTTCAAGTTCAAATTTTTCTTCTCAAACCCATCAATCTACGGATCTCTCAGCTTCATTATGTTTTGCCAAGAATTCTTCGCACGGTCAAATAGGTGGATCAGATGACGACGTGGTGATTGTAGCTGCATATCGTACTGCCATCTGCAAAGCAAAGCGTGGGGGCTTTAAGGATACCCTTCCAGATGACCTGCTTGCCACAGTTCTGAAGGCTGTAATAGAGAAAACAAATGTGAACCCAGCAGAAGTTGGAGACATTGTTGTGGGCACTGTACTGGCACCTGGATCAGATAGAGGAATTGAGTGCAGAATGGCTGCCTTTTATGCAGGTTTCCCAGAGACAGTGCCTCTTCGAACTGTCAATAGGCAATGTTCATCTGGACTTCAGGCGGTTTCTGACGTAGCTGCTTATATAAAAGCTGGGTTCTATGAAATTGGGATTGGGGCTGGATTGGAGTCTATGACAGTAGATCGTGTGAATAGGCTTCGCAACATTAACCCAAAGGTAGAAACCTTTGCAGAAGCCCGGGATTGTCTTCTTCCAATGGGAATTACTTCTGAGAATGTAGCGCAGCGTTATGGTGTGACAAGGCTAGAGCAAGATCAAGCTGCTGTTGAGTCTCATCAGCGTGCTGCAGCTGCAACAGCAGCTGGTAAGTTCAAAGAAGAAATCATTCCAGTTTCTACAAAGTTTGTGGACCCTAAAACTGGAGTGGAGAAGAAAATTGTTGTTTCTGTCGATGATGGTATCCGGCCAAACACAAATTTAGTGGATTTGGCAAAGCTGAAGCCTGCATTCCAGAAAGATGGAACCACAACAGCAGGGAATGCTAGCCAAATTAGTGACGGTGCAGCAGCTGTTCTCCTCATGAAGAGAAGAGTGGCTGTGCAAAAGGGGCTTCCTATACTTGGAATCTTCAGGAGTTTTGCTGCTGTTGGAGTAGATCCTGCAGTCATGGGTGTTGGCCCTGCTGTTGCTATCCCAGCTGCAGTGAAATCCGTGGGCCTTGAACTTGGCAACATTGACTTATTTGAAATCAATGAGGCATTTGCATCACAGTATGTTTATTGCCTCAAGAAATTGGGACTTGATCCCAGAAAGGTCAATGTCAATGGTGGTGCCATTGCTCTTGGACATCCTTTGGGTGTTACAGGTGCACGCTGTGTTGCAACTTTGTTGAATGAGATGAAACGTCGTGGCAAGGATTGTCGCTATGGTGTAATCTCAATGTGCATAGGGTCAGGTATGGGAGCTGCTGCTGTATTTGAAAGGGGAGACTTTTGAAGATTTGTGCAAGTTTAGAAGAGTTCATACAAATAACGATCTTTTGTCACCGTATGCTTGACATTAGACATCATTTGAAGTCTTTCTATTTTGAATTCAGCTTTGATTGAAATATTACAAAAAATTGGAAGTGTAAACAAGAATTATTTTAACCATGAATTATGACTCAACTATAGCATTGAGTTTGCTAACTCAATTTTGCCCTTGTTGTAAGATAATCTCTTTCAAACAAAAAGATAAGAAAATGAAACAAGGAAGATACAAAAATGTTAATGAACCCAAAATACAATTCTCGCTACTTAAGAGTGGATACTTTGACCATGACTTAAATATTACCTTGGCCACATAGCCTAAGTAATTTGTG
>Glyma20g01180.1 sequence type=CDS gene model=Glyma20g01180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAAGCAATTCAAAGACAGAGAGTCCTGCTTGATCATCTTCAACCCATTTCTTCAAGTTCAAATTTTTCTTCTCAAACCCATCAATCTACGGATCTCTCAGCTTCATTATGTTTTGCCAAGAATTCTTCGCACGGTCAAATAGGTGGATCAGATGACGACGTGGTGATTGTAGCTGCATATCGTACTGCCATCTGCAAAGCAAAGCGTGGGGGCTTTAAGGATACCCTTCCAGATGACCTGCTTGCCACAGTTCTGAAGGCTGTAATAGAGAAAACAAATGTGAACCCAGCAGAAGTTGGAGACATTGTTGTGGGCACTGTACTGGCACCTGGATCAGATAGAGGAATTGAGTGCAGAATGGCTGCCTTTTATGCAGGTTTCCCAGAGACAGTGCCTCTTCGAACTGTCAATAGGCAATGTTCATCTGGACTTCAGGCGGTTTCTGACGTAGCTGCTTATATAAAAGCTGGGTTCTATGAAATTGGGATTGGGGCTGGATTGGAGTCTATGACAGTAGATCGTGTGAATAGGCTTCGCAACATTAACCCAAAGGTAGAAACCTTTGCAGAAGCCCGGGATTGTCTTCTTCCAATGGGAATTACTTCTGAGAATGTAGCGCAGCGTTATGGTGTGACAAGGCTAGAGCAAGATCAAGCTGCTGTTGAGTCTCATCAGCGTGCTGCAGCTGCAACAGCAGCTGGTAAGTTCAAAGAAGAAATCATTCCAGTTTCTACAAAGTTTGTGGACCCTAAAACTGGAGTGGAGAAGAAAATTGTTGTTTCTGTCGATGATGGTATCCGGCCAAACACAAATTTAGTGGATTTGGCAAAGCTGAAGCCTGCATTCCAGAAAGATGGAACCACAACAGCAGGGAATGCTAGCCAAATTAGTGACGGTGCAGCAGCTGTTCTCCTCATGAAGAGAAGAGTGGCTGTGCAAAAGGGGCTTCCTATACTTGGAATCTTCAGGAGTTTTGCTGCTGTTGGAGTAGATCCTGCAGTCATGGGTGTTGGCCCTGCTGTTGCTATCCCAGCTGCAGTGAAATCCGTGGGCCTTGAACTTGGCAACATTGACTTATTTGAAATCAATGAGGCATTTGCATCACAGTATGTTTATTGCCTCAAGAAATTGGGACTTGATCCCAGAAAGGTCAATGTCAATGGTGGTGCCATTGCTCTTGGACATCCTTTGGGTGTTACAGGTGCACGCTGTGTTGCAACTTTGTTGAATGAGATGAAACGTCGTGGCAAGGATTGTCGCTATGGTGTAATCTCAATGTGCATAGGGTCAGGTATGGGAGCTGCTGCTGTATTTGAAAGGGGAGACTTTTGA >Glyma20g01180.2 sequence type=CDS gene model=Glyma20g01180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAAGCAATTCAAAGACAGAGAGTCCTGCTTGATCATCTTCAACCCATTTCTTCAAGTTCAAATTTTTCTTCTCAAACCCATCAATCTACGGATCTCTCAGCTTCATTATGTTTTGCCAAGAATTCTTCGCACGGTCAAATAGGTGGATCAGATGACGACGTGGTGATTGTAGCTGCATATCGTACTGCCATCTGCAAAGCAAAGCGTGGGGGCTTTAAGGATACCCTTCCAGATGACCTGCTTGCCACAGTTCTGAAGGCTGTAATAGAGAAAACAAATGTGAACCCAGCAGAAGTTGGAGACATTGTTGTGGGCACTGTACTGGCACCTGGATCAGATAGAGGAATTGAGTGCAGAATGGCTGCCTTTTATGCAGGTTTCCCAGAGACAGTGCCTCTTCGAACTGTCAATAGGCAATGTTCATCTGGACTTCAGGCGGTTTCTGACGTAGCTGCTTATATAAAAGCTGGGTTCTATGAAATTGGGATTGGGGCTGGATTGGAGTCTATGACAGTAGATCGTGTGAATAGGCTTCGCAACATTAACCCAAAGGTAGAAACCTTTGCAGAAGCCCGGGATTGTCTTCTTCCAATGGGAATTACTTCTGAGAATGTAGCGCAGCGTTATGGTGTGACAAGGCTAGAGCAAGATCAAGCTGCTGTTGAGTCTCATCAGCGTGCTGCAGCTGCAACAGCAGCTGGTAAGTTCAAAGAAGAAATCATTCCAGTTTCTACAAAGTTTGTGGACCCTAAAACTGGAGTGGAGAAGAAAATTGTTGTTTCTGTCGATGATGGTATCCGGCCAAACACAAATTTAGTGGATTTGGCAAAGCTGAAGCCTGCATTCCAGAAAGATGGAACCACAACAGCAGGGAATGCTAGCCAAATTAGTGACGGTGCAGCAGCTGTTCTCCTCATGAAGAGAAGAGTGGCTGTGCAAAAGGGGCTTCCTATACTTGGAATCTTCAGGAGTTTTGCTGCTGTTGGAGTAGATCCTGCAGTCATGGGTGTTGGCCCTGCTGTTGCTATCCCAGCTGCAGTGAAATCCGTGGGCCTTGAACTTGGCAACATTGACTTATTTGAAATCAATGAGGCATTTGCATCACAGTATGTTTATTGCCTCAAGAAATTGGGACTTGATCCCAGAAAGGTCAATGTCAATGGTGGTGCCATTGCTCTTGGACATCCTTTGGGTGTTACAGGTGCACGCTGTGTTGCAACTTTGTTGAATGAGATGAAACGTCGTGGCAAGGATTGTCGCTATGGTGTAATCTCAATGTGCATAGGGTCAGGTATGGGAGCTGCTGCTGTATTTGAAAGGGGAGACTTTTGA
>Glyma20g01180.1 sequence type=predicted peptide gene model=Glyma20g01180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKAIQRQRVLLDHLQPISSSSNFSSQTHQSTDLSASLCFAKNSSHGQIGGSDDDVVIVAAYRTAICKAKRGGFKDTLPDDLLATVLKAVIEKTNVNPAEVGDIVVGTVLAPGSDRGIECRMAAFYAGFPETVPLRTVNRQCSSGLQAVSDVAAYIKAGFYEIGIGAGLESMTVDRVNRLRNINPKVETFAEARDCLLPMGITSENVAQRYGVTRLEQDQAAVESHQRAAAATAAGKFKEEIIPVSTKFVDPKTGVEKKIVVSVDDGIRPNTNLVDLAKLKPAFQKDGTTTAGNASQISDGAAAVLLMKRRVAVQKGLPILGIFRSFAAVGVDPAVMGVGPAVAIPAAVKSVGLELGNIDLFEINEAFASQYVYCLKKLGLDPRKVNVNGGAIALGHPLGVTGARCVATLLNEMKRRGKDCRYGVISMCIGSGMGAAAVFERGDF* >Glyma20g01180.2 sequence type=predicted peptide gene model=Glyma20g01180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKAIQRQRVLLDHLQPISSSSNFSSQTHQSTDLSASLCFAKNSSHGQIGGSDDDVVIVAAYRTAICKAKRGGFKDTLPDDLLATVLKAVIEKTNVNPAEVGDIVVGTVLAPGSDRGIECRMAAFYAGFPETVPLRTVNRQCSSGLQAVSDVAAYIKAGFYEIGIGAGLESMTVDRVNRLRNINPKVETFAEARDCLLPMGITSENVAQRYGVTRLEQDQAAVESHQRAAAATAAGKFKEEIIPVSTKFVDPKTGVEKKIVVSVDDGIRPNTNLVDLAKLKPAFQKDGTTTAGNASQISDGAAAVLLMKRRVAVQKGLPILGIFRSFAAVGVDPAVMGVGPAVAIPAAVKSVGLELGNIDLFEINEAFASQYVYCLKKLGLDPRKVNVNGGAIALGHPLGVTGARCVATLLNEMKRRGKDCRYGVISMCIGSGMGAAAVFERGDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
