Glyma20g01120 - SoyBase

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Report for Sequence Feature Glyma20g01120

Feature Type:	gene_model
Chromosome:	Gm20
Start:	774098
stop:	775173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g01120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26500	AT	Annotation by Michelle Graham. TAIR10: cytochrome b6f complex subunit (petM), putative \| chr2:11270370-11270747 FORWARD LENGTH=125	SoyBase	E_val: 2.00E-36	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009512	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytochrome b6f complex	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009496	GO-mf	Annotation by Michelle Graham. GO Molecular Function: plastoquinol--plastocyanin reductase activity	SoyBase	N/A	ISS
PF08041	PFAM	PetM family of cytochrome b6f complex subunit 7	JGI		ISS
UniRef100_B9R7K1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastoquinol-plastocyanin reductase, putative n=1 Tax=Ricinus communis RepID=B9R7K1_RICCO	SoyBase	E_val: 4.00E-40	ISS
UniRef100_I1ND22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ND22_SOYBN	SoyBase	E_val: 4.00E-83	ISS

Expression Patterns of Glyma20g01120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g01120 not represented in the dataset	Glyma20g01120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g01120

Paralog	Evidence	Comments
Glyma07g21150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g01120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g008600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g01120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g01120

Limit To All Plant Sequences

>Glyma20g01120.1   sequence type=CDS   gene model=Glyma20g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGCCAGTGCAACAACTCTAGCCACAATCACTGTTGTGGCGGCTAGCCCCAGTGTTGGCAGCAGAAGGAGTGGGAAGAGGAATGTGAACTTCATCAGAGGGTTGAATTCTTTTGGAGGGTTGAAGGCTCAGAACAATGTGACATTACTAGGCCTTCCTGTGTGCACTGAGCAGTGCTTTGCAAAGGTGGTGAGCTCATTGAAATATCCATCATCATCATCACGTAAGGGGAGAGGTGGAGGTGCTGCCTTTTCAACATGCAATGCTGCTGGTGAGATTTTCCAGATTGCAGCCATCATGAATGGCCTTGTGCTTGTTGGGGTGGCAATAGGGTTTGTCCTTCTTCGAGTCGAAGCGTTTGTGGAAGAGTCTGAGTGA

Predicted protein sequences of Glyma20g01120

Limit To All Plant Sequences

>Glyma20g01120.1   sequence type=predicted peptide   gene model=Glyma20g01120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMASATTLATITVVAASPSVGSRRSGKRNVNFIRGLNSFGGLKAQNNVTLLGLPVCTEQCFAKVVSSLKYPSSSSRKGRGGGAAFSTCNAAGEIFQIAAIMNGLVLVGVAIGFVLLRVEAFVEESE*

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