Glyma20g01060 - SoyBase

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Report for Sequence Feature Glyma20g01060

Feature Type:	gene_model
Chromosome:	Gm20
Start:	739576
stop:	746681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g01060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49430	AT	Annotation by Michelle Graham. TAIR10: long-chain acyl-CoA synthetase 2 \| chr1:18291188-18295641 FORWARD LENGTH=665	SoyBase	E_val: 0	ISS
GO:0001676	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0002213	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to insect	SoyBase	N/A	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0010025	GO-bp	Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process	SoyBase	N/A	ISS
GO:0010143	GO-bp	Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004467	GO-mf	Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity	SoyBase	N/A	ISS
GO:0031957	GO-mf	Annotation by Michelle Graham. GO Molecular Function: very long-chain fatty acid-CoA ligase activity	SoyBase	N/A	ISS
KOG1256	KOG	Long-chain acyl-CoA synthetases (AMP-forming)	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_B9RZF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl CoA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RZF1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1ND18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ND18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g01060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g01060 not represented in the dataset	Glyma20g01060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g01060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g007900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g01060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g01060

Limit To All Plant Sequences

>Glyma20g01060.1   sequence type=CDS   gene model=Glyma20g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAGGTTTATACTGTGAAGGTTGAAGAGGGAAGGCTTGCAACTGATGGAAAGCCATCAGTGGGTCCTGTCTATAGGAGCATTTATGCTAAAGATGGTCTCTTGGAGGTTCCTTCTGATTTTAAGTCCCCTTGGGATTTCTTCAGGGACTCTGTTAAGAGGAACCCCAACAACAATATGTTGGGTAGGCGTCAAAAAACCGAATCTAAGTTGGGTTCCTATACATGGCTCACGTATCAAGATGTTTATGATGCTGCCATGAAAATGGGTTCGGCCATAAGGAGCCGTGGTGTCAATCCTGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAGGCTTGCAATAGCTGTGCAGTGTCATATGTTCCATTATATGACACCCTTGGTCCTAATGCAGTGGAGTTTATCATAAACCATGCTGAAGTTTCAATTGCATTTGTACAGGAGAAAAAGATTCCATCAGTTTTGTCATGTCTTGCACAGTGTTCTTCAAATCTTAAAACTATTGTGAGCTTTGGAAGTGTTTCTACCACACAAAAGAAAGAAGCTGAGGGGCATGGCGCGTCCTGCTTCTCATGGGGAGAGTTTCTCCAGCTGGGATGTCTGGATTGGGATCTACCATCAAAAAAGAAGACTGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGATCCCAAAGGTGTCGTTATTAAGAATGAGGCTTTCATGGCTGAAGTGTTGTCTGTTGACCACATAATTATGTTAACAGACAGAGTGGCAGGAGAAGACGATGTGTACTTTTCCTTTCTTCCTCTTGCTCATGTATATGACCAAATAATGGAGACGTATTGCATCTCCAAGGGCTCATCAATAGGATTTTGGCAAGGCGATGTCAGGTTCTTGCTGGAAGATATTCAGGAACTGAAACCAACTATATTTTGTGGAGTTCCTAGAGTTTTTGACCGTATTTATGCAGGTATCAAAAGCAAAGTATCTTCTGCAGGACCACTGCAGAGTACATTGTTTCAGTGCGCTTACAACTACAAGTTAAAATATCTGGAGAAGGGTCTTCCGCAACACAAAGCAGCACCTCTGTTTGATAGGCTTGTGTTTGATAAGACAAAACTAGCTCTAGGTGGACGTGTTCGCATCCTGTTATCCGGAGCTGCTCCTTTGCCTAGGCATGTGGAAGAGTTTATGAGGGTCACTAGTGGATCTACATTATCACAAGGATATGGTCTTACTGAAAGTTGTGCCGGGTGTTTCACGGCGATAGGTGATGTGTATTCTATGACAGGAACTGTTGGAGTTCCCATGACAACCATTGAAGCCAGGCTTGAATCTGTGCCAGAGATGGGATATGATGCCCTCTCCAATGTACCCCGTGGAGAAATTTGTCTGAGAGGAAATACCTTGTTCTCCGGTTATCACAAGCGTGAAGATCTTACCAAAGAAGTTATGGTTGATGGCTGGTTTCATACAGGTGACATTGGAGAATGGCAATCAAATGGGGCCATGAAAATTATTGATCGGAAGAAGAATATCTTTAAATTGTCTCAAGGAGAATATATTGCTGTGGAGAATATTGAAAACAAGTATTTGCAATGCCCTCTTATAGCATCGATTTGGGTGTATGGAAACAGCTTTGAGTCATTCTTGGTGGCTGTTGTGGTCCCTGAAAGAAAAGCCATTGAGGATTGGGCAAAAGAGCACAATTTGACTGATGATTTTAAATCTTTATGTGATAATCTTAAAGCAAGAAAACACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAACTTAGAGGATTTGAGCTGCTAAAAGCCATTCATCTGGAACCAAATCCCTTCGACATAGAAAGAGATTTAATAACTCCAACATTCAAATTGAAGAGACCACAATTGCTCAAGTACTACAAGGATCATATTGATCAACTATACAAGGAAGCAAAGGGAGCAATGGTGTAA

Predicted protein sequences of Glyma20g01060

Limit To All Plant Sequences

>Glyma20g01060.1   sequence type=predicted peptide   gene model=Glyma20g01060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNNMLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSFGSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVIKNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGDVRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSKVSSAGPLQSTLFQCAYNYKLKYLEKGLPQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTESCAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYHKREDLTKEVMVDGWFHTGDIGEWQSNGAMKIIDRKKNIFKLSQGEYIAVENIENKYLQCPLIASIWVYGNSFESFLVAVVVPERKAIEDWAKEHNLTDDFKSLCDNLKARKHILDELNSTGQKHQLRGFELLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDHIDQLYKEAKGAMV*

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