SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02070 | AT | Annotation by Michelle Graham. TAIR10: indeterminate(ID)-domain 5 | chr2:505523-509154 FORWARD LENGTH=602 | SoyBase | E_val: 7.00E-114 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translation | SoyBase | N/A | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG3576 | KOG | Ovo and related transcription factors | JGI | ISS | |
| PTHR10593 | Panther | SERINE/THREONINE-PROTEIN KINASE RIO | JGI | ISS | |
| PF12171 | PFAM | Zinc-finger double-stranded RNA-binding | JGI | ISS | |
| UniRef100_B9S7A9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S7A9_RICCO | SoyBase | E_val: 3.00E-155 | ISS |
| UniRef100_I1ND00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ND00_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g00850 not represented in the dataset |
Glyma20g00850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g19540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g005900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g00850.1 sequence type=CDS gene model=Glyma20g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCACCTTTTTCTGCAGCATCGCTCTTTGCAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACACCATCATCATCAACCACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACACACAGAGCCTTCTGTGATGCTTTGGCACAAGAAAGTGCAAGAGAGGCACCAAACCTGAGCAGTGCCATTGGCAACCAACTGTATGGAAACAGCAACAACATGTCCTTAGGCTTATCTCAAATCCCTTCCATCCATGACCAAAACCCTCAACCTAGTGAACTAATGCGTTTTAGTGGTGCGCCAAGGGCTGGTCAATTTGACCACATTCTCCCACCCAACATTGCCTCATCATCACCCTTTAGACATTCCATGCAAACCCCTCCATTCTTCTTGCAAGAATCAAACCAAACCTACCATGACTCAAACAAGCCATTCCAAGGACTGATACAATTATCTGACCTAAACAACAATAACCCTTCTGCCTCCAACCTCTTCAACCTTCCTTTTCTTTCCAACCGTGCCATCAACAGCAACAACTATTCTGAGGAACACAATTCAACACTGCTGAAGGGTCCAATTTCTTCTCAGAAGGCACCATGA
>Glyma20g00850.1 sequence type=predicted peptide gene model=Glyma20g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPFSAASLFAIREEDQNQMKQQHSSTPSSSTTPAAPPPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGREYRCDCGTLFSRRDSFITHRAFCDALAQESAREAPNLSSAIGNQLYGNSNNMSLGLSQIPSIHDQNPQPSELMRFSGAPRAGQFDHILPPNIASSSPFRHSMQTPPFFLQESNQTYHDSNKPFQGLIQLSDLNNNNPSASNLFNLPFLSNRAINSNNYSEEHNSTLLKGPISSQKAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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