SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19850 | AT | Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein | chr3:6898383-6901157 REVERSE LENGTH=554 | SoyBase | E_val: 4.00E-100 | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| PF03000 | PFAM | NPH3 family | JGI | ISS | |
| UniRef100_B9RPY2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RPY2_RICCO | SoyBase | E_val: 1.00E-114 | ISS |
| UniRef100_UPI000233D95B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D95B related cluster n=1 Tax=unknown RepID=UPI000233D95B | SoyBase | E_val: 0 | ISS |
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Glyma20g00770 not represented in the dataset |
Glyma20g00770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g41760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g005100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g00770.2 sequence type=CDS gene model=Glyma20g00770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAAAATTATGAGGCAACCCTCTTCAACTCCTCATCTTCATCATCCCCATCGTCTCCTGAGAGCAGTTCAGCCAAGAGATTTTCTTATTCATCACGAGTTACTCCCAAGACTGTAAAGTCAACTTTGCCTAACAAAGCAGGGTGGTTTGAGGATTTGGCTACTTTACCCCCAAAGATCATTGAGAAGATTCTCCAGACAATTGGAGCTTACAAAACAGATAACAACAACTTAATTATCACAAGATTTCTGCTTCATTATCTGAAAATAGTGACTCCAACAAGAGAGGTTAATTGCAACAACAGTGTTGAGTATGCTGGTCTAGCAGAAACAGCTGTTTATGGGGTCATATTTGTTGGTAACAAGAGTTTTTCTTGTAGAGGCCTTTTTTGGGTATTAAGGATTGTGTCAAGATTTGGGATGAGTAGAGATTGCAGAATTGAAATTGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCAACTTTGGATGATCTACTATTCTCTGGGCATCATATGGGACTATATTATGATGTAACATTTGTGATAAGATTGATTAAACAATTTGTTGATATGAATGGCTCTGATGGGGTATGTGTACAAAAGTTGAAAAAAGTTGGTAGATTAGTAGACAAGTATTTGATAGAGATATCCCCTGATCAGAACCTCAAGGTCACTAAATTTCTTGCAGTTGCTGAATGTTTGCCAGATTGTGCTAGGGATTGCTTTGATGGGGTGTACAGAGCCATTGACATCTATCTTCAGTCTCATCCGATGCTGGCATTTGAGGAGAGGTCAAGATTATGTAGATGTCTTAATTACAATAAACTAAGCTTTGAAGTGTGTAAGGATCTTGCAAAGAACCCGAGAATACCTCCAATGATTGCAATGCAGGCTCTTATTTCTCAACAAACCAACATTCCATCAAGTGACTTAATCATTGAGGAAAGTGAAATCATGAACCCTTCCCAAATCATTTTGCACTATGACAAGACAGATAGCTTCTTGGAAGAGAAACAAGATATGAGACAACCTTGA
>Glyma20g00770.2 sequence type=predicted peptide gene model=Glyma20g00770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQNYEATLFNSSSSSSPSSPESSSAKRFSYSSRVTPKTVKSTLPNKAGWFEDLATLPPKIIEKILQTIGAYKTDNNNLIITRFLLHYLKIVTPTREVNCNNSVEYAGLAETAVYGVIFVGNKSFSCRGLFWVLRIVSRFGMSRDCRIEIEKLIGGVLEQATLDDLLFSGHHMGLYYDVTFVIRLIKQFVDMNGSDGVCVQKLKKVGRLVDKYLIEISPDQNLKVTKFLAVAECLPDCARDCFDGVYRAIDIYLQSHPMLAFEERSRLCRCLNYNKLSFEVCKDLAKNPRIPPMIAMQALISQQTNIPSSDLIIEESEIMNPSQIILHYDKTDSFLEEKQDMRQP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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