Glyma20g00710 - SoyBase

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Report for Sequence Feature Glyma20g00710

Feature Type:	gene_model
Chromosome:	Gm20
Start:	439621
stop:	447241
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18620	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr3:6408849-6410716 FORWARD LENGTH=345	SoyBase	E_val: 5.00E-145	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1313	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7JNH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase ZDHHC17 n=1 Tax=Medicago truncatula RepID=G7JNH1_MEDTR	SoyBase	E_val: 2.00E-174	ISS
UniRef100_UPI000233D915	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D915 related cluster n=1 Tax=unknown RepID=UPI000233D915	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00710

Paralog	Evidence	Comments
Glyma09g41790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g004400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g00710

Limit To All Plant Sequences

>Glyma20g00710.3   sequence type=transcript   gene model=Glyma20g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATCATCGTCACGTGCGATTTTTGCAAACGAAAGTACAAAACTGCAAACTCCTGTTCAAGTTTGAGGTCTAACTCAGCTTCCAATTCTTACACTGTTATGGATTCTTCTTCTTCTACCCAGGAGCAATTTGTAACTGAGGTTACCGAGAATTATGAGACAACATGCTGGGGTTGTGGACTGCGTGTTTTGCTTCCATCATGTGCGTCCGCTTTCAAATGTGGATGGTGTGGGGCCATTACAGACCAGAACAAAAAGAAACCTAACCTGAAGTGCATCAGGTGGAGAGTGGTGCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGGCAGTTTATCCTGTTGTCTTTTCTGTCAGTATTCTTTGTGGAGTTTTTCACTCAATCATTACAGCAATCTTGTCCGTAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGGTGTGCTGGCACACCACCAAATATATTATGGGGAAGCTACCCCACTGTAGGGAAAAGTGACCTTGAAAATTATACTTACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGCGTCCTGGACATGGATCATCACTGCCCATTTATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATTCAGGCTTGCGTACATGGCCACCATTGAAGTACTCTCTTGGGCACATTAACGGGATAGGATTGAGCGTTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGCTCACAAGCAGATAGTGAAGAAGAAAAAAAAGATTGCCAAAATCTTGTTACATTTTTTAGTCTTCAATATTTTGTAACTAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAAACACATCAAATGATACAGTCATGTTTTGAAGTCAATTACTTTGGCACGTTTTGACAATTTGTATCGAAGTATAATTGGATATTTTCAAAAGAAGATCACTTCAACTGTATATACTTGTGGATTAACATAAATTGTTGACAAGAGGTGTCAGGAGTGCCAGTCTCTTTTGTGTTGGCTGATGGATTAGTTTCCAATTGTGTTTAGGATTGCTCTGAATCTGGTATGGGAAATTTTAGGGGCAGATTCAACTTTGTGTTTCTGACCAAAATCAATTGGGTTGTGTTCTATAGTTTCTGGGGGTGGCTTTGGTCCTCTAGCTTTAGAGGTGTTTCTGTGAATAGAGAAGGATTTATGACTGTTAGTACTTACCCTCTTGTTTACTTTATACTTCCAAATTTTAATAAACTTCAGGCTTCTGAGTTTTATAAGTCTGAAGGTCTCACTTTATTATAGAAATGCATTGTCCCGGCAATTTAAAACCTAGGAGCATAGCTAATGTATTAAAAAATTTATATGTATTTTTGTGCAGTGCTGGTAACAGTGTGCTTGTGTATAAGACCTGTTGAGAATATGATTCATGAGTTGATTTTGACTAGCAATGTTGTAATATTGGATGTTTGATATTAGTTCTTTGTACCTTATTTTTTAGGTTTAAACAACCTTTCATCCTTATAAAATAGGGTATTTTTTATTTGTCTTTTAATTT

Coding sequences of Glyma20g00710

Limit To All Plant Sequences

>Glyma20g00710.2   sequence type=CDS   gene model=Glyma20g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTTCTACCCAGGAGCAATTTGTAACTGAGGTTACCGAGAATTATGAGACAACATGCTGGGGTTGTGGACTGCGTGTTTTGCTTCCATCATGTGCGTCCGCTTTCAAATGTGGATGGTGTGGGGCCATTACAGACCAGAACAAAAAGAAACCTAACCTGAAGTGCATCAGGTGGAGAGTGGTGCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGGCAGTTTATCCTGTTGTCTTTTCTGTCAGTATTCTTTGTGGAGTTTTTCACTCAATCATTACAGCAATCTTGTCCGTAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGGTGTGCTGGCACACCACCAAATATATTATGGGGAAGCTACCCCACTGTAGGGAAAAGTGACCTTGAAAATTATACTTACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGCGTCCTGGACATGGATCATCACTGCCCATTTATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATTCAGGCTTGCGTACATGGCCACCATTGAAGTACTCTCTTGGGCACATTAACGGGGTTAGTAGCAGCGAACTGGCATGGAGAATCATGAATGAAATTGTTGTTGCATTCATGAGATCTGCCCTGCTTCTTTCCTCTAGGGGACTCATTCTTGCTTATCTTTTCATTGCAAGTGTTTCATTGCAGATAGGATTGAGCGTTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGCTCACAAGCAGATAGTGAAGAAGAAAAAAAAGATTGCCAAAATCTTGTTACATTTTTTAGTCTTCAATATTTTGTAACTAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAAACACATCAAATGA

>Glyma20g00710.3   sequence type=CDS   gene model=Glyma20g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTTCTACCCAGGAGCAATTTGTAACTGAGGTTACCGAGAATTATGAGACAACATGCTGGGGTTGTGGACTGCGTGTTTTGCTTCCATCATGTGCGTCCGCTTTCAAATGTGGATGGTGTGGGGCCATTACAGACCAGAACAAAAAGAAACCTAACCTGAAGTGCATCAGGTGGAGAGTGGTGCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGGCAGTTTATCCTGTTGTCTTTTCTGTCAGTATTCTTTGTGGAGTTTTTCACTCAATCATTACAGCAATCTTGTCCGTAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGGTGTGCTGGCACACCACCAAATATATTATGGGGAAGCTACCCCACTGTAGGGAAAAGTGACCTTGAAAATTATACTTACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGCGTCCTGGACATGGATCATCACTGCCCATTTATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATTCAGGCTTGCGTACATGGCCACCATTGAAGTACTCTCTTGGGCACATTAACGGGATAGGATTGAGCGTTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGCTCACAAGCAGATAGTGAAGAAGAAAAAAAAGATTGCCAAAATCTTGTTACATTTTTTAGTCTTCAATATTTTGTAACTAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAAACACATCAAATGA

Predicted protein sequences of Glyma20g00710

Limit To All Plant Sequences

>Glyma20g00710.2   sequence type=predicted peptide   gene model=Glyma20g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSSTQEQFVTEVTENYETTCWGCGLRVLLPSCASAFKCGWCGAITDQNKKKPNLKCIRWRVVRDRCFVSVVLVFMFFVIFGGVWAVYPVVFSVSILCGVFHSIITAILSVATISFFSFAAFRCAGTPPNILWGSYPTVGKSDLENYTYCHYCSKPKSPRAHHCRSCRKCVLDMDHHCPFIGNCVGAANHRSFIAFLISAVLSTIYVSIMSVYSGLRTWPPLKYSLGHINGVSSSELAWRIMNEIVVAFMRSALLLSSRGLILAYLFIASVSLQIGLSVLLWQQLSYIYQGKTYLSHLSSQADSEEEKKDCQNLVTFFSLQYFVTRFLPTFRVTRKKHIK*

>Glyma20g00710.3   sequence type=predicted peptide   gene model=Glyma20g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSSTQEQFVTEVTENYETTCWGCGLRVLLPSCASAFKCGWCGAITDQNKKKPNLKCIRWRVVRDRCFVSVVLVFMFFVIFGGVWAVYPVVFSVSILCGVFHSIITAILSVATISFFSFAAFRCAGTPPNILWGSYPTVGKSDLENYTYCHYCSKPKSPRAHHCRSCRKCVLDMDHHCPFIGNCVGAANHRSFIAFLISAVLSTIYVSIMSVYSGLRTWPPLKYSLGHINGIGLSVLLWQQLSYIYQGKTYLSHLSSQADSEEEKKDCQNLVTFFSLQYFVTRFLPTFRVTRKKHIK*

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