Glyma20g00690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g00690

Feature Type:	gene_model
Chromosome:	Gm20
Start:	418200
stop:	422779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65730	AT	Annotation by Michelle Graham. TAIR10: YELLOW STRIPE like 7 \| chr1:24442639-24446122 FORWARD LENGTH=688	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF03169	PFAM	OPT oligopeptide transporter protein	JGI		ISS
UniRef100_B9H5T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptide transporter OPT family n=1 Tax=Populus trichocarpa RepID=B9H5T3_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1NCY4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCY4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00690

Paralog	Evidence	Comments
Glyma09g41800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g004200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g00690

Limit To All Plant Sequences

>Glyma20g00690.1   sequence type=CDS   gene model=Glyma20g00690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGGGTAATAAGTTGAAGGGTGAAGAGGCATTTAGGAAAACAAGGGTGCCACCATGGACAAAACAAATAACAGTGAGATCAGTGGTGACAAGCTTTGTCCTAAGTGTAGTTTTCATCTTCATTGTGTGCAAACTCAACTTCACCACAGGGATCATACCATCCCTCAATGTAGCTGCAGGTTTGTTGGGGTTTGCAGCAATCAAGGCCTACACTGCACTCCTCAACAACTGTGGCCTTCTCAAACAACCATTCACTCGCCAAGAGAACACTGTCATCCAAACCTTTGTTGTTGCCTCCTCTGGAATCGCCTTCAGCAGTGGCATGGGAAGTTATCTACTTGGTATGAGCCCATACATTGCTTCTCAAGTTGATGGGGGGAACACGCCAATCAATACAAAGACTATCTCACTTGGTTGGATGTTTGGTTTTCTCTTTGTTGTTAGCTTTGTGGGCCTCTTCTCTATTGTGCCTCTAAGAAAGGTGATGATTCTGAAGTACAAACTAACATACCCGAGTGGAACCGCCACGGCTCTCCTTGTCAATAGCTTACACACACCAAAAGGAGCAAAACTAGCAAAAAAACAGGTTGCTTTGCTCTTCAAAAGCTTTTGTGGTAGTTTTGCTTTTGGTTTTTTCCAGTGGTTTTTCACTGCAGGAGATGGTTGTGGGTTCAGCACTTTTCCCACATTTGGTCTTGAAGCTTACAGTAACAGGTTCTACTTTGATTTCTCATCTACCTATGTTGGGGTCGGAATGATTTGCCCTTACTTGATAAATGCATCTTTGCTTCTTGGAGCTGTAATCTCATGGGGCATTCTATGGCCCTGGATTGAGCACAAGAAAGGAATCTGGTATAGCGCAGATCTACCTGGTAGCAGTCTAAGTGGCATCCAAGGATATAGGATCTTCACCGCAATTGCCATGATGCTTGGTGATGGTCTTTACCATTGCATCATCATGCTAATACGAGTTGCCTACAGTCTCATCACCCAATACCTAAAGAAAAAAGTGCCATCAACTGTAAACCATGAAGATGTTGATCAAAACTCAAGTGAAGATTTTGATGCTCAACGTCGCACTGAGTATTTCTTGAAAGACGAGATTCCCTCTTGGGTTGCTATTATTGGTTACAGTGTTCTTGCAGTTATTTCAATCATAACGGTTTCACTCATCTTTCCTCAACTGAAATGGTATCATGTACTAATCACTTACCTCATTGCTCCTATTCTGGCCTTTTGCAATGCCTATGGATGTGGCCTCACTGATTGGTCTTTGGCATCAAACTATGGCAAAGTTGCCATCATTATATTCAGTTCATGGGTTGGCCTTGAGCATGGAGGCCTCATTGCTGGCCTTGCATCATGTGGTGTCATGATGAGCATTGTATCCACAGCTTCTGATTTGATGCAAGACTTCAAAACCGGGTATCTCACTCTTGCATCTCCTCGGTCCATGTTTATGAGCCAAGTTTTAGGAACCGCCACGGGTTGTCTTCTGTCGCCTTTGATGTTTTGGTTTTTCAACAAGGCTTACACACTTGGTGACCCTCAGGGCTCTTACCCTGCACCATATGGAGAGGTGTACCGTGGGATGGCCCTTCTAGGAGCAAAGGGTTTCTCTTCTCTTCCCAAAAATTGTCTTGAACTGGCTATCATTTTCTTTTTCTTGGCTGTGTTTATTAACATAGTGCACGATTTGTTGGAGCATTATGAGACCAAATATAGGATATACAGGTTTGTTCCAAACCCCATGGCCTTGGCCATCCCATTCTATCTTGGTGGTTACTTTGCTATTGACATGTGCATTGGGAGCTTGATTCTGTTTTTGTGGGAGAAAAAAAACAAACAAAAAGCAAAAGATTATGGTCCTGCTTTGGCATCTGGACTCATTTGTGGTGATTCTTTGTGGAGTGTTCCTGCTGCTATACTGTCCCTTGCTGGAGCCAACCCACCAATTTGCATGAAGTTCTTGTCTAGTGCTGTGAACAAAAAAGTTGACACCTTCTTAAGTGGTGGTCCTTGA

Predicted protein sequences of Glyma20g00690

Limit To All Plant Sequences

>Glyma20g00690.1   sequence type=predicted peptide   gene model=Glyma20g00690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEGNKLKGEEAFRKTRVPPWTKQITVRSVVTSFVLSVVFIFIVCKLNFTTGIIPSLNVAAGLLGFAAIKAYTALLNNCGLLKQPFTRQENTVIQTFVVASSGIAFSSGMGSYLLGMSPYIASQVDGGNTPINTKTISLGWMFGFLFVVSFVGLFSIVPLRKVMILKYKLTYPSGTATALLVNSLHTPKGAKLAKKQVALLFKSFCGSFAFGFFQWFFTAGDGCGFSTFPTFGLEAYSNRFYFDFSSTYVGVGMICPYLINASLLLGAVISWGILWPWIEHKKGIWYSADLPGSSLSGIQGYRIFTAIAMMLGDGLYHCIIMLIRVAYSLITQYLKKKVPSTVNHEDVDQNSSEDFDAQRRTEYFLKDEIPSWVAIIGYSVLAVISIITVSLIFPQLKWYHVLITYLIAPILAFCNAYGCGLTDWSLASNYGKVAIIIFSSWVGLEHGGLIAGLASCGVMMSIVSTASDLMQDFKTGYLTLASPRSMFMSQVLGTATGCLLSPLMFWFFNKAYTLGDPQGSYPAPYGEVYRGMALLGAKGFSSLPKNCLELAIIFFFLAVFINIVHDLLEHYETKYRIYRFVPNPMALAIPFYLGGYFAIDMCIGSLILFLWEKKNKQKAKDYGPALASGLICGDSLWSVPAAILSLAGANPPICMKFLSSAVNKKVDTFLSGGP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain