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Report for Sequence Feature Glyma20g00675

Feature Type:gene_model
Chromosome:Gm20
Start:410949
stop:413200
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g00675
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38290AT Annotation by Michelle Graham. TAIR10: ammonium transporter 2 | chr2:16039672-16041864 REVERSE LENGTH=359 SoyBaseE_val: 2.00E-55ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009581GO-bp Annotation by Michelle Graham. GO Biological Process: detection of external stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015695GO-bp Annotation by Michelle Graham. GO Biological Process: organic cation transport SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0008519GO-mf Annotation by Michelle Graham. GO Molecular Function: ammonium transmembrane transporter activity SoyBaseN/AISS
GO:0015398GO-mf Annotation by Michelle Graham. GO Molecular Function: high affinity secondary active ammonium transmembrane transporter activity SoyBaseN/AISS
PTHR11730Panther AMMONIUM TRANSPORTER JGI ISS
PTHR11730:SF1Panther AMMONIUM TRANSPORTER JGI ISS
PF00909PFAM Ammonium Transporter Family JGI ISS
UniRef100_C4NY35UniRef Annotation by Michelle Graham. Most informative UniRef hit: High affinity ammonium transporter n=1 Tax=Lotus japonicus RepID=C4NY35_LOTJA SoyBaseE_val: 8.00E-100ISS
UniRef100_I1NCY3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NCY3_SOYBN SoyBaseE_val: 4.00E-151ISS

Expression Patterns of Glyma20g00675
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g00675 not represented in the dataset
Glyma20g00675 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00675
ParalogEvidenceComments
Glyma09g41810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00675 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g004100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g00675
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g00675
>Glyma20g00675.1   sequence type=CDS   gene model=Glyma20g00675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTGCCATTACCCTCAAACCTAGCGGTTGTTGATGGAAGCCCTGAATGGTTTAGTAGAGCAGACAATGCATGGAAGCTAATAGCTGCAACCCTAGTTGGTGGAGCAGTGAAGAAGAAATGGGTAGTGAACTCAGCATTCATGTCACTCTATGCTTTTACATGTGTGTTCTTCTGTTGGGTTGTGTGGGGATACAGAATGTCTTTTGGTGATGAGCTTCTTCCTTTCTGGGGAAAGCCTGCTATGTCACTTGAGCATGCATATCTTTTCAAGAAGCCTTCTGTAATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATAACCCCTGCTGCAGGTGTTGTTCAGGGATGGGCATCACTTATAATGGGACTTCTCTCAGGCTCAATTCCTTGGTTCACCATGATGGTCATCCATAAGAGATCAAAGCTACTGCAGAAGGTTGATGATACTATGGCAGTGTTCCATACTCATGCCATTGCAGAAACCCTAGGAGGACTCCTCACTGGGCTCTTTGCTGATCCAAGACTCAACCGGTTGTTCTATGGACATGATGCTCAATACGTTGTTTTCTTTTATGGTTTCGGTTCCAACAAGCTCAGCACCGGCTTCAGGCAAATGGGAGTCCAAATCCTTGGGATTATCTTTGTTATCTTTGTCAACTTCATTCGGATCTTTTTTCCATTGAGAATTTCTGAAGAGGATATGGAGATAGGTGATGAGGCTGCTCATGGTGAAGAAGCTTATGCAATCTGGGGTCAGGGTGATAAGCTTGAAAACTCAAGTTCAAAGTATGGAAGTTCATTATATAATGATGTTGAAGCTGGTGCCCCCAAGAAGAAGCGTGCTGGCACTGTTCAGATGATGTCCAACTAA
Predicted protein sequences of Glyma20g00675
>Glyma20g00675.1   sequence type=predicted peptide   gene model=Glyma20g00675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVPLPSNLAVVDGSPEWFSRADNAWKLIAATLVGGAVKKKWVVNSAFMSLYAFTCVFFCWVVWGYRMSFGDELLPFWGKPAMSLEHAYLFKKPSVIGAVQGMITGLVCITPAAGVVQGWASLIMGLLSGSIPWFTMMVIHKRSKLLQKVDDTMAVFHTHAIAETLGGLLTGLFADPRLNRLFYGHDAQYVVFFYGFGSNKLSTGFRQMGVQILGIIFVIFVNFIRIFFPLRISEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYNDVEAGAPKKKRAGTVQMMSN*






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