SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18610 | AT | Annotation by Michelle Graham. TAIR10: nucleolin like 2 | chr3:6404270-6407822 REVERSE LENGTH=636 | SoyBase | E_val: 1.00E-19 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF59 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_Q6Z1C0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolin 1 n=2 Tax=Oryza sativa RepID=NUCL1_ORYSJ | SoyBase | E_val: 1.00E-30 | ISS |
| UniRef100_UPI000233D912 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D912 related cluster n=1 Tax=unknown RepID=UPI000233D912 | SoyBase | E_val: 5.00E-80 | ISS |
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Glyma20g00661 not represented in the dataset |
Glyma20g00661 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g00661.1 sequence type=CDS gene model=Glyma20g00661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCACCAATCCCCGTGATCAGAACCATATCTCCTCCAAGGTATTTCAAGTCCACCTCCTCCGCACTGTCCCAGCCGAATACCTCACTCAGATTGTCAAAAAGTCTGTCGGGTTCCTCAGATACTCAACCTAAGCTTTTTCCAACCATGCTTTGGTTTCCATTGGCACTGATAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATCGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGCTCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGCTGAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCCTGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTAAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGCTAGGAGGTTTCCCCTTGAGAGTTGAAAAAGCAAAGCCTCGACGTGATAACTGGGGTATAGGCAGTGGCAGAGATGGACGTGATAACTGGGGTATAGGCAGTGGCAGAGATGGTGGTGATCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAGTGGGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGACTCGGGGAGGAAGAACCACTCTTACTGA
>Glyma20g00661.1 sequence type=predicted peptide gene model=Glyma20g00661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSPIPVIRTISPPRYFKSTSSALSQPNTSLRLSKSLSGSSDTQPKLFPTMLWFPLALIALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERAQSPTVFVTGFDSSLPAEKLKASLEEHFGSCGEIQRISIPTFPDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFPLRVEKAKPRRDNWGIGSGRDGRDNWGIGSGRDGGDHQFGGRDGSGYTSRVGWGRSGGGGWHSLHFSDEDSGRKNHSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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