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Report for Sequence Feature Glyma20g00646

Feature Type:gene_model
Chromosome:Gm20
Start:370222
stop:391641
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g00646
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48920AT Annotation by Michelle Graham. TAIR10: nucleolin like 1 | chr1:18098186-18101422 FORWARD LENGTH=557 SoyBaseE_val: 3.00E-28ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0010588GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0080056GO-bp Annotation by Michelle Graham. GO Biological Process: petal vascular tissue pattern formation SoyBaseN/AISS
GO:0080057GO-bp Annotation by Michelle Graham. GO Biological Process: sepal vascular tissue pattern formation SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
KOG0123 KOG Polyadenylate-binding protein (RRM superfamily) JGI ISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_Q41042UniRef Annotation by Michelle Graham. Most informative UniRef hit: L. (clone na-481-5) n=1 Tax=Pisum sativum RepID=Q41042_PEA SoyBaseE_val: 1.00E-31ISS
UniRef100_UPI000233D911UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D911 related cluster n=1 Tax=unknown RepID=UPI000233D911 SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g00646
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g00646 not represented in the dataset
Glyma20g00646 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00646
ParalogEvidenceComments
Glyma09g41821 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00646 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g004000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g00646
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g00646
>Glyma20g00646.1   sequence type=CDS   gene model=Glyma20g00646   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAATAAATCAGATCCCAAAGCTGGTGCTACTGCTGTGCCCCCTCTCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTGACTGCAAAGAAGCAGAAGAGAGATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTCGCAGATTTTGAACCAGATAAGAATTCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGAAAACCTGATAGTGCTAACTGTTCCAGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGATGCAGGGAATATGGATATTGATGAGGGTTATAATTCTGAAGAATGTAGTGAAGGAACACAAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACTCTAAAGCTCCTCAAGAAAATCCTAAAATGCTATCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTAACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAACCGTGTGGAGAAGTTGTTGATGTTCGTCTACATACAGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTCAGTTAAATTATACAGAATTGTTAAGATGCCGCATCAGAGTTGTTTTAGCTCCACAAAAGCATAAGCATACTGCCAATAGAAGCTTCCATGTTAATTCTAGCAACTTGAGTCACTCATTTCAAAGGAGTGAAAGAACTCAGCCTGTGAAAGCTTCAGAGATTTCAGGGGACTGGGAACAAGAAACTGAGTCAAAAATAATTGCTAACTGCAAAGACCTAAGTGCTACTTCAAAGACAATATATGCTTCAAACTTGGCATACAGTATGGAGAAGGATGATATGGAGTTTCTTTTCAAAAATTGTGGAGAAATTGTTGATATCCGCCTACATACAGATCATAACGGGCGGTTTAAAGGCCATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATAAAGTATATCTGGGACGTCCTGTTGGAGTTTTTATTGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAAACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTATTGGGAAAGTTCTAAAAGGGTAGCTACTCTGAAAGAACAAAATGCTCCACCAAAGACAATATATGTCAGAAACTTGTCATACAGAGTGGAACAGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCGTCTACATCGGAATCACAATGGTAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCGAAAAAA
Predicted protein sequences of Glyma20g00646
>Glyma20g00646.1   sequence type=predicted peptide   gene model=Glyma20g00646   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNKSDPKAGATAVPPLRIGKREGENEDEQQVTAKKQKRDEVAEEQRIMDEIVSDDSFADFEPDKNSEAKKDSLSKQEKKGKPDSANCSSSLESLADGSEEDAGNMDIDEGYNSEECSEGTQEKMQVLPVKSSENSEKGIEEKDSKAPQENPKMLSTPNERNAGSKTIVTRNLSYSVERADLENLFKPCGEVVDVRLHTDAEGRFRGFGHVEFATAEAAQKALQLNYTELLRCRIRVVLAPQKHKHTANRSFHVNSSNLSHSFQRSERTQPVKASEISGDWEQETESKIIANCKDLSATSKTIYASNLAYSMEKDDMEFLFKNCGEIVDIRLHTDHNGRFKGHGHVEFATTEAAQKALELNNKVYLGRPVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSYWESSKRVATLKEQNAPPKTIYVRNLSYRVEQADMENLFKECGKIVDVRLHRNHNGRLNGFGQVEFATAEAAKK






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