Glyma20g00430 - SoyBase

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Report for Sequence Feature Glyma20g00430

Feature Type:	gene_model
Chromosome:	Gm20
Start:	226435
stop:	228405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33520	AT	Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein \| chr1:12157488-12158876 REVERSE LENGTH=462	SoyBase	E_val: 8.00E-115	ISS
GO:0009870	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4315	KOG	G-patch nucleic acid binding protein	JGI		ISS
PTHR15818	Panther	G PATCH AND KOW-CONTAINING	JGI		ISS
PTHR15818:SF2	Panther	gb def: t54 protein	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
UniRef100_G7IA49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor spp2 n=1 Tax=Medicago truncatula RepID=G7IA49_MEDTR	SoyBase	E_val: 2.33E-156	ISS
UniRef100_I1NCW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NCW9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00430

Paralog	Evidence	Comments
Glyma09g42031	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g002200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g00430

Limit To All Plant Sequences

>Glyma20g00430.1   sequence type=CDS   gene model=Glyma20g00430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATCTCCACCTCCCCACCGCCGCCGACGCCGAATCCCTCGCCTTCGAACTCCACACCGACGGGGACCAACCCGAATCCGACATCTCCTACGGCCTCAACGTTCGTGCCGACAAAAATCCAGAAGGAAACAACAAAGACGACAGTGATGGTGCTGCCCCACGGCGTCGAGTTCCGCTGGAGGCCACGGCGCTGCAGAAGCTGAAAAGCGACCTGGAGAGGCTGCCGGAGGACCAGGGGATGGAGGAGTTCAAGGATGTCGCCGTCGAGGGCTACGGCGCGGCACTGCTCGCCGGCTATGGCTGGAAGGAAGGAATGGGGATTGGGAGGAACGCCAAGGAGGACGTGAAGGTGGTGGAGATCAAACGGAGAACTGCCAAGGAAGGATTAGGGTTTGTCGGTGATGCTCCTGCGGCGCTCGTTCTGAGCAACAATGAGAAGGACAACAAGAAGAAGGAGAAGAAGGAGAAGGTTGTTAGGATTGTTGGGGGAAGAGATGCTGGGTTGAAGGGTAGTGTTGTGTCTAGGATTGGGGATGATTATCTTGTTTTGGAGCTTTCAAGAAGTGGAGAGAAGGTGAAGGTGAAGGTGAAGGTTGGTGATGTTGCTGAATTGGGTTCTAAGGAGGAAGAGAGGTGTTTGAGGAAATTGAAGGAGTTGAAGACTCAGCGTGAGGATAAAGTGTCAAAGAGTAAGCGCGGTAGGGATGAGGTGGAGGAGAAGAGAGGGGATGTTAATAGGAGAAAGGAGAAGAGAGTTGATGTTGGTAGGAAAGAGGAGAGGAGAGTGGTGGATCATAGGAAGGTTTCCTGGCTTACAAGTCACATTCGTGTTAGGGTGATTAGCCGGGATTTGAAAGGGGGGCGGTTGTATTTGAAGAAGGGGGAGGTTCTGGATGTTGTTGGGCCTACTACTTGTGATATATCTATGGATGAGAACCGGGAGATTGTTCAAGGAGTGTCACAAGATGTTCTCGAGACAGTGATACCGAAACGTGGGGGACCGGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTGTACGGGAGTATGGCAGAGAGGGATTTGGACCAGGAAACTGCCATAGTTAGGGATGCTGATACCCATGAGCTGCTCAATGTGAAACTTGAACAGATTGCAGAGTATATAGGGGACCCAAGCTTATTGGGACATTGA

Predicted protein sequences of Glyma20g00430

Limit To All Plant Sequences

>Glyma20g00430.1   sequence type=predicted peptide   gene model=Glyma20g00430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNLHLPTAADAESLAFELHTDGDQPESDISYGLNVRADKNPEGNNKDDSDGAAPRRRVPLEATALQKLKSDLERLPEDQGMEEFKDVAVEGYGAALLAGYGWKEGMGIGRNAKEDVKVVEIKRRTAKEGLGFVGDAPAALVLSNNEKDNKKKEKKEKVVRIVGGRDAGLKGSVVSRIGDDYLVLELSRSGEKVKVKVKVGDVAELGSKEEERCLRKLKELKTQREDKVSKSKRGRDEVEEKRGDVNRRKEKRVDVGRKEERRVVDHRKVSWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDENREIVQGVSQDVLETVIPKRGGPVLVLAGKYKGVYGSMAERDLDQETAIVRDADTHELLNVKLEQIAEYIGDPSLLGH*

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