SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00370 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:163153-166111 REVERSE LENGTH=541 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005315 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0008514 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2532 | KOG | Permease of the major facilitator superfamily | JGI | ISS | |
| PTHR11662 | Panther | PHOSPHATE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11662:SF23 | Panther | SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATED | JGI | ISS | |
| PF07690 | PFAM | Major Facilitator Superfamily | JGI | ISS | |
| UniRef100_G7LBQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sodium-dependent phosphate transport protein n=1 Tax=Medicago truncatula RepID=G7LBQ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D908 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D908 related cluster n=1 Tax=unknown RepID=UPI000233D908 | SoyBase | E_val: 0 | ISS |
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Glyma20g00410 not represented in the dataset |
Glyma20g00410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g002000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g00410.2 sequence type=CDS gene model=Glyma20g00410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTTGGTGGTTTGGTTTCCAACAGAAACTTCACTTGTTTCATTGGACCAGGAAGTGTATATCAATTGGGAAAGGATCTATCACCTCAAAGAGGGGGAATTTCTTGCGCATTTGTTGCACGTTATGGTGGTCAGATTGCAAAGGATCCTTTCTCAAGATGCTGGCATGGGATGTGTTTTCATGCTAAAGAACCTTTGAATGAGAAAGTTTCAAAACCAATACCAACATTTCATGATGAAGTGCAGCATTGTTCTCCACTATCCCAGAAATCCATTCACTGCATGAACATGAAACTTAAGGCCAGCAGAAGATGTCAGTACTTCCTCTCTTCAGATCCCTATAGCAGTAGCCTTATTCAACAAAGAGCAGTATATGGACTAGGTTTAAACAAACTTGGTAAGGCAAATACGGCTCGTGTTCATTACAAGTCTGAGGAGCATGATATAACAGAAGCAAAGGTGGATCCTCTGGAATCAACTGAAGGGACAGGTGAATCCATTCTCCTGGAAGGAAATGTTCCACAAGTATCTTCTTGGTGGCAGCAGTTTCCTAAGCGATGGGTTATTGTATTGCTATGTTTTGCAGCATTTCTGCTGTGCAACATGGACCGTGTGAATATGAGCATAGCAATACTTCCAATGTCACAAGAGTTTAATTGGAACAGTGCAACGGTTGGCCTAATTCAATCATCTTTTTTCTGGGGCTATCTACTTACTCAGATCCTTGGTGGCATATGGGCAGACAAAATTGGTGGGAAGCTAGTGCTAGGTTTTGGTGTTGTCTGGTGGTCAATGGCAACAGTTTTAACACCTATTGCTGCAAGAATTGGGCTCCCTTGTTTGCTTATTATGCGTGCCTTTATGGGGATTGGTGAGGGTGTTGCCATGCCTGCTATGAATAATATGCTTTCCAAGTGGATTCCTGTTTCGGAGAGAAGCAGATCACTTGCCCTAGTATATAGTGGCATGTACCTAGGTTCTGTGGTTGGCTTGGCATTCTCACCATTGCTAATCCAAAAATTTGGTTGGCCATCAGTGTTTTACTCCTTTGGATCTCTTGGAAGTATCTGGTTTGCCTTGTGGTTGAGAAAGGCATATAGCTCCCCAAAAGATGACCCTGATCTTGGGGTAGAGGAGAAAAGGCTCATACTGGAAGGCAATGTATCAAATGCACCTGTTTCTTCCATTCCTTGGAAATTAATTTTATCAAAAGCACCTGTTTGGGCTCTTATAATCTCCCACTTCTGTCACAATTGGGGGACATTTATTCTTTTAACCTGGATGCCTACTTACTATAATCAGGTTCTAAAGTTCAACCTCATGGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCAGCTTTTGCAAATATTGGTGGGTGGATTGCTGACACACTAGTGAGAAAAGGCCTATCCATAACAGTTGTTCGAAAGATCATGCAATCAATCGGGTTTCTGGGTCCAGCCTTTTTCCTTTCACAGCTGAGCCATGTCAGAACACCTGCCATGGCTGTACTGTGCATGGCCTGTAGTCAGGGATCTGATGCATTCTCGCAATCTGGTCTGTATTCCAATCACCAAGACATTGGACCACGCTATGCTGGTGTATTGCTTGGACTATCGAATACCGCAGGAGTGCTTGCTGGTGTCTTTGGTACAGCTGCAACTGGATTCATACTCCAGCGAGGTTCTTGGAATGATGTTTTTAAGGTTGCTGTTGCATTGTACATAATAGGCACATTGGTGTGGAATGTCTTTTCAACTGGGGAGAAAGTTCTTGACTGA
>Glyma20g00410.2 sequence type=predicted peptide gene model=Glyma20g00410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALGGLVSNRNFTCFIGPGSVYQLGKDLSPQRGGISCAFVARYGGQIAKDPFSRCWHGMCFHAKEPLNEKVSKPIPTFHDEVQHCSPLSQKSIHCMNMKLKASRRCQYFLSSDPYSSSLIQQRAVYGLGLNKLGKANTARVHYKSEEHDITEAKVDPLESTEGTGESILLEGNVPQVSSWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKIGGKLVLGFGVVWWSMATVLTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQKFGWPSVFYSFGSLGSIWFALWLRKAYSSPKDDPDLGVEEKRLILEGNVSNAPVSSIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLMESGLLCVLPWLTMAAFANIGGWIADTLVRKGLSITVVRKIMQSIGFLGPAFFLSQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWNDVFKVAVALYIIGTLVWNVFSTGEKVLD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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