Glyma20g00370 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g00370

Feature Type:	gene_model
Chromosome:	Gm20
Start:	178860
stop:	182467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G30340	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr3:11956626-11958969 FORWARD LENGTH=364	SoyBase	E_val: 2.00E-120	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7IBE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IBE3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D906	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D906 related cluster n=1 Tax=unknown RepID=UPI000233D906	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00370

Paralog	Evidence	Comments
Glyma09g42080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g001700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g00370

Limit To All Plant Sequences

>Glyma20g00370.3   sequence type=transcript   gene model=Glyma20g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATCATGCATCGTATAGCATTCTTCCACAGCTAAATAAACAATAAACTGAAATTAAGAGAGAGAAAAAAAAATCATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAAAAGTAAAGAGGAAGAACAAAGTGCCGTGAAGGGTACTCAAGAAAGTCAAGAAGATGAAGAAAGTAAGAATAATTTGGGGGCCAGTCCTAATGTACCTTCAAAGCTAAGGCCAAATGGGGAACAAGGATTCTCTGAATTACAAGTGAAGCAGTTAGCTATTACAGTAACTAAAAGTTGATAAAGTTTTAGTTTCAGGACTAATTTGTCAATTACACATGTCAAGCAGTGCATGTCAATTTCTTAATTACAAAGTTTTTATCTACCTATATCATGTAATGTACTAGTTGATAACTTGATATGCACATGCAAAACATGAGTTCCAATCTCACAGGGAGAGATATTATATGAATATCCATAATATTAATGGTTTCCGTACTGTGAATTGAATACATGATTG

Coding sequences of Glyma20g00370

Limit To All Plant Sequences

>Glyma20g00370.2   sequence type=CDS   gene model=Glyma20g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTGGGCTGGTAGGTTCAGGCTTGTGCTATGTGGCAATGTCATGGTGTGTGAAACAAAGGGGTCCAGTATTTACTTCAGCATTTACCCCTCTTCTACAAATGTTCGTGGCTGTGCTTGATTTCTCTATATTACATGAGGAAATTTATCTTGGAAGTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAAAAGTAAAGAGGAAGAACAAAGTGCCGTGAAGGGTACTCAAGAAAGTCAAGAAGATGAAGAAAGTAAGAATAATTTGGGGGCCAGTCCTAATGTACCTTCAAAGCTAAGGCCAAATGGGGAACAAGGATTCTCTGAATTACAAGTGAAGCAGTTAGCTATTACAGTAACTAAAAGTTGA

>Glyma20g00370.3   sequence type=CDS   gene model=Glyma20g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAA

Predicted protein sequences of Glyma20g00370

Limit To All Plant Sequences

>Glyma20g00370.2   sequence type=predicted peptide   gene model=Glyma20g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLKFHQVWKPALVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERKRKLEGHIICLLFLSALVGVTLTQCLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIEKVNMKNLSAKAKVLGTFVCIGGALMLILYKGVPLIKQQPEHLADKGTITSPASKLKKWIIGSLLLTAGCLLWSSWFLMQARISKKYPCQYSSTAILSSFAAIQSAILTLVIDRSNAKWILKGKLEIMTVVYAGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQMFVAVLDFSILHEEIYLGSIAGSVLVISGTYILLWGKSKEEEQSAVKGTQESQEDEESKNNLGASPNVPSKLRPNGEQGFSELQVKQLAITVTKS*

>Glyma20g00370.3   sequence type=predicted peptide   gene model=Glyma20g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLKFHQVWKPALVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERKRKLEGHIICLLFLSALVGVTLTQCLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIEKVNMKNLSAKAKVLGTFVCIGGALMLILYKGVPLIKQQPEHLADKGTITSPASKLKKWIIGSLLLTAGCLLWSSWFLMQARISKKYPCQYSSTAILSSFAAIQSAILTLVIDRSNAKWILKGKLEIMTVVYAYCRISLGYFWHVYSTLG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain