Glyma20g00320 - SoyBase

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Report for Sequence Feature Glyma20g00320

Feature Type:	gene_model
Chromosome:	Gm20
Start:	124650
stop:	142043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19960	AT	Annotation by Michelle Graham. TAIR10: myosin 1 \| chr3:6949787-6956736 FORWARD LENGTH=1166	SoyBase	E_val: 0	ISS
GO:0006473	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein acetylation	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0016459	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: myosin complex	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0160	KOG	Myosin class V heavy chain	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF37	Panther	MYOSIN-VII	JGI		ISS
PF00063	PFAM	Myosin head (motor domain)	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7IEA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin-like protein n=1 Tax=Medicago truncatula RepID=G7IEA4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D904	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D904 related cluster n=1 Tax=unknown RepID=UPI000233D904	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g00320

Paralog	Evidence	Comments
Glyma09g42180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g00320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g001300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g00320

Limit To All Plant Sequences

>Glyma20g00320.1   sequence type=CDS   gene model=Glyma20g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCAACATCCAAGGTCCTGCCTGCTCTCCACCCTATCAAATCATTGCCTCCCAAGTTCAAGATTACTTCTGGTAATCCGACTGCTGGTCTAATGGAAAACCATGGAGATGCTAAGTTCAGAAGCAATGATGTGATCAGATCAGGTAGTCCAGAAAATGATGCTTTGATAGGGGAGGTTGCTGAGGAAGCTCAGAACTGTGCTGGTGACATGGGTGTTTACGGTGAGGACTTGGCGTACAGCAGAAAAGGTGTGTCGTTAGAAGACAGGCCATCAATTGCTGATGAAGACTTAGAATCTGTTCCTCTGCCCTTCCCATCAATTTCAATGTCCTCTAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAACTTCAGTCTTGGTTTCAACTTCCGAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCTATCATTTCACTGTTTGACGGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCGTCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAACAGACACGGCCATCCGAGAAATGATACGAGATGAAGTCAATCAATCTATAATTATAAGTGGGGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGCGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTGCTAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGATCATATCATATATTTTATCAGCTATGTGCTGGTGCACCTCCATCTCTCAGGGGGAAGCTAAACCTACAAAATGCAGAAGACTATAATTATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGTACAGTCATGGAAGCCCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAAGCTGTAGAAGATGAGGGTCTGTTCCATGTAGCTAAATTAATTGGCTGTAGCATTGAAGATCTCAAGTTGACACTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACGCTATCACAGGCCATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATAGGAACAGTTTTGAACAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGTTTATTATCCTTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATCTAACACTTGCTAACAAGCTTAAACAGCATTTGAATTCTAATTCGTGCTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCTGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCATGCACGTGTCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAGCCGGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTTCAACTGATGCAACGACTGGAGAGTACTACTCCACATTTTATTCGCTGCATTAAACCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAATTTGCCAGAAGATATGGTTTTCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCGGTTGCAATTCTTCATCAGTTTAATATTTTGTCGGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGGACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTTCCAAGCACGTCGTTCTCTCAAGGATCTTCGGGGAGGAATCACTACTTTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATTCAGCTTTACTTAAGAGGCATAGAGCTGCTGTTATTATACAGAAGCAAATCAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTGATGCTGCAATAGTCATACAAGCAGTTATTCGTGGTTGGTTGGTCAGAAGATGCTCAGGAAATATTGGATTTTTGAAATCTGGAGACATGAAGATGAAAGAGTCTGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCCGAATTACAGTGCCGAGTACTTAAGGCTGAAGCTGCCCTTAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAACTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATCGATGACTCTGAAAGAAATTCAGACACATCTGTTAATGCAAGTGATGAGCGGGATTACAGCTGGGATGTGGGAGGCAATCATCGGCGCCAAGAAAGCAATGGGGCAAGATCAACGAGTGCTGGTCTAAGTGTTATAAGTCGGCTGGCTGAAGAATTCGAGCACAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAGGTAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAAAAGTTATTATAAATAAACTTGGAAGCGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGA

Predicted protein sequences of Glyma20g00320

Limit To All Plant Sequences

>Glyma20g00320.1   sequence type=predicted peptide   gene model=Glyma20g00320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSATSKVLPALHPIKSLPPKFKITSGNPTAGLMENHGDAKFRSNDVIRSGSPENDALIGEVAEEAQNCAGDMGVYGEDLAYSRKGVSLEDRPSIADEDLESVPLPFPSISMSSRERRWSDTTPYASKKKLQSWFQLPNGNWELGKIITTSGNESIISLFDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYNYLRQSNCYSITGVNDAEEFRTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFHVAKLIGCSIEDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTLANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHVDSIQLLSSCTCPLPQIFASHMLTQSDKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLDNVASQDPLSVSVAILHQFNILSEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGFQARRSLKDLRGGITTLQSFIRGDKTRKAYSALLKRHRAAVIIQKQIKAVFARNRMRTISDAAIVIQAVIRGWLVRRCSGNIGFLKSGDMKMKESDEVLVKSSFLAELQCRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDTSVNASDERDYSWDVGGNHRRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVIINKLGSEDGALEKMKKKWWGRRNSTRIN*

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