Glyma20g00230 - SoyBase

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Report for Sequence Feature Glyma20g00230

Feature Type:	gene_model
Chromosome:	Gm20
Start:	41824
stop:	45829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g00230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38220	AT	Annotation by Michelle Graham. TAIR10: Peptidase M20/M25/M40 family protein \| chr4:17925251-17926919 FORWARD LENGTH=433	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0004046	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacylase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2275	KOG	Aminoacylase ACY1 and related metalloexopeptidases	JGI		ISS
PTHR11014	Panther	PROTEASE M20-RELATED	JGI		ISS
PTHR11014:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01546	PFAM	Peptidase family M20/M25/M40	JGI		ISS
PF07687	PFAM	Peptidase dimerisation domain	JGI		ISS
UniRef100_G7IBI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminoacylase-1 n=1 Tax=Medicago truncatula RepID=G7IBI0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NCV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NCV4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g00230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g00230 not represented in the dataset	Glyma20g00230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g00230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g000500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g00230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g00230

Limit To All Plant Sequences

>Glyma20g00230.2   sequence type=transcript   gene model=Glyma20g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTAAGGAAAAAAAAAAAGGAAGAAGGAACGTGAGTAAAGCAGTTGCAATGTGCGATAGTGGGTGGCCACAGAGAGAGAAAGATAAGAAGTAAGGAGGTAGTAGGCAGTGTGTTTGTTTGTGTTGTGTTGGGCGTTAAGGATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGAGCAAGTGGTGTGGCACCTACCCCTACCTAATTCTCATTTTCTGCCTTTCCTTATGTAACAATAGAGAGGAAAAATAACACCTCAACTGACTTTGTTGTAGCTTCTGACACATAACAATAAAGAGGAAACAAATATGTTTGTTTCAAACTTTGCTCAGAGCAACTTCACCCTTGCACGAATGCTTTCATAAATAATTTTCTTGTGCACAATATTATGAAAACTCAATCCTTCATTTAATTGCGTTAATAGGTTCTTTTGCTTCT

Coding sequences of Glyma20g00230

Limit To All Plant Sequences

>Glyma20g00230.1   sequence type=CDS   gene model=Glyma20g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTCTCGGGCAGTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGA

>Glyma20g00230.2   sequence type=CDS   gene model=Glyma20g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGA

Predicted protein sequences of Glyma20g00230

Limit To All Plant Sequences

>Glyma20g00230.1   sequence type=predicted peptide   gene model=Glyma20g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLNCKSKNILLLVLLAIAIETGWSSEEESSIISRFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPSILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFRPLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPWWLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTLGQFKQKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPAIGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL*

>Glyma20g00230.2   sequence type=predicted peptide   gene model=Glyma20g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLNCKSKNILLLVLLAIAIETGWSSEEESSIISRFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPSILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFRPLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPWWLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTFKQKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPAIGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL*

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