SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05620 | AT | Annotation by Michelle Graham. TAIR10: uridine-ribohydrolase 2 | chr1:1679286-1681527 FORWARD LENGTH=322 | SoyBase | E_val: 0 | ISS |
| GO:0006148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inosine catabolic process | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0035251 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0047724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inosine nucleosidase activity | SoyBase | N/A | ISS |
| KOG2938 | KOG | Predicted inosine-uridine preferring nucleoside hydrolase | JGI | ISS | |
| PTHR12304 | Panther | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE | JGI | ISS | |
| PF01156 | PFAM | Inosine-uridine preferring nucleoside hydrolase | JGI | ISS | |
| UniRef100_D7KF65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inosine-uridine preferring nucleoside hydrolase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KF65_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NCV1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCV1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g00200 not represented in the dataset |
Glyma20g00200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g000200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g00200.1 sequence type=CDS gene model=Glyma20g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCCGATACGGAACCTAAGAAGATCATAATTGATACCGACCCTGGCATTGATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAAGTTGAAGTTATTGGACTCACAACCATCTTTGGAAATGTGTACACCACTCTGGCAACCAGAAATGCCTTGCATTTGTTGGAGGTTGCTGGGAGAACGGATATACCAGTGGCAGAAGGATCTCATGTGACTTTAACTAATGGAACAAAACTTCGTATTGCAGATTTTGTCCATGGTGCAGATGGACTAGGCAACCAAAATTTTCCTCCACCAAAGGGGAAGCCCATTGAAGAATCAGCTGCTTCTTTTTTGGTTCATCAAGCAAAAGTTAACCCTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCTTTGGCTATACAGCTGGATCCAGAATTTGCTAACAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCCGCTGCTGAAGCCAACACATTTGGTGATCCAGATGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACAGAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGCGCAATACTTGAACAAAATCTTGGATGTATATTTCTCTTACCATCAGGAGGCATACAATATCAAAGGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCAAAACTTGTGACTTGCATAGAGGGTATTGCCAGAGTCCAAACAAGTGGCATTACAAGGGGAATCACAATATTCTACAACAAACAAAAAAGGTTTGCTGAAATGAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTGACAGTTGATGCTCCTAGAGTTATGAAATTGGTAATGGATCGTCTTGTGGACTCTTGA
>Glyma20g00200.1 sequence type=predicted peptide gene model=Glyma20g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAADTEPKKIIIDTDPGIDDAMAIFLALQSPEVEVIGLTTIFGNVYTTLATRNALHLLEVAGRTDIPVAEGSHVTLTNGTKLRIADFVHGADGLGNQNFPPPKGKPIEESAASFLVHQAKVNPGKVTVVALGPLTNIALAIQLDPEFANNIGQIVLLGGAFAVNGNVNPAAEANTFGDPDAADVVFTSGADVLAVGINVTHQVVLTESDREKLASSNGKFAQYLNKILDVYFSYHQEAYNIKGVYLHDPTVVLAAVDPKLVTCIEGIARVQTSGITRGITIFYNKQKRFAEMNEWSNKPTVKVAVTVDAPRVMKLVMDRLVDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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