Glyma19g45310 - SoyBase

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Report for Sequence Feature Glyma19g45310

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50498191
stop:	50507709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g45310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49960	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:20324173-20327687 REVERSE LENGTH=824	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
PF06241	PFAM	Protein of unknown function (DUF1012)	JGI		ISS
UniRef100_I1NCU2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NCU2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5H8A6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ion channel CASTOR n=1 Tax=Lotus japonicus RepID=CASTO_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g45310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g45310

Paralog	Evidence	Comments
Glyma03g42520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g45310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g263500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g45310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g45310

Limit To All Plant Sequences

>Glyma19g45310.1   sequence type=CDS   gene model=Glyma19g45310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTGGATTCGGAGACGTCGGGTTCCGCCAGAGATTGGTTCTTCCCGTCGCCATCCTTCTTGCGGTCCTCTTCTTCGCAATATGGCCGTCGATTCTATTCAAACTCAAAGCCGCACTCTCCTCCGAGCAGCTCCACTCGCATTCGTCATCGCCGCAGAGTTAAATTCCCCCGGACTCCTACTAACGACAAATCTCAGCTTTCCGACACTGAAAATGTTAAGTCATCAGCGACTGCGAGGAATAATCTTATCTGCCTTTCGCAATTTCGTTTCCAGTTTGCCCTCGTGACGTTGACTATTGTTTTTTTGTTGCTGCTGCTCCGAAACACGCATCTAGAAAGCCAAGTCACTAAGTTGCAGGGTGAGATTCTCGGCCTTAATCACAGATTACATGCGTGCCACAAGTTGGACACCTTGTACGTAACAAGTTCCATATCTCAGGACGTGGATCCTTGGTCACGTGAAAACTTTAAAAGAAATCTAGCTCTTTTTTTCTCGTTCACACTTCTTTTTATCCCTCTCCTCATTTTCAAGTACATAGGCTTTGTATCAAAATCAAGATTTTCCGACAATATATCAGAACAAGTTTCTCTAAACAAGCAAATAGCATATCGGGTTGATGTATTTTTATCGGTTTACCCATATGCTAAACCACTCGTATTGTTAGTGGCAACGCTCTTGCTAATTTTTCTTGGAGGATTGGCCCTTTTTGGGGTAACTACCGAGGATTTAGCACATTGCCTCTGGTTATCTTGGACCTACGTTGCTGATTCTGGCAATCATGCCAGCTCCCAAGGTATTGGTCCAAGGTTAGTTGCGGTTTCCATTAGCTTTGGTGGGATGCTTATATTTGCAATGATGCTTGGACTTGTGTCCGATGCAATATCTGAGAAATTTGACTCACTGAGGAAAGGAAAAAGCGAGGTGGTTGAGCAAAATCATACTTTAATTCTTGGTTGGAGTGATAAATTGGGTTCATTACTAAATCAGCTTGCCATAGCCAATGAGAGTCTGGGTGGAGGAACTGTTGCAGTGATGGCTGAGCGAGACAAGGAAGAAATGGAGCTTGACATTGCAAAAATGGAGTTTGATTTCAAAGGAACATCTGTCATATGCAGAAGTGGCAGCCCTCTGATTCTGGCTGATCTGAAAAAGGTTTCTGTTTCAAAAGCACGTGCAATAATAGTCCTTGCTGAAGATGGGAATGCTGATCAGAGTGATGCCCGTGCTTTGAGAACAGTCTTAAGTCTGACTGGAGTAAAAGAAGGATTACGAGGGCACATAGTGGTTGAATTGAGTGATTTAGACAATGAGGTCCTTGTTAAACTTGTGGGTGGTGATCTTGTTGAAACTGTTGTAGCTCATGATGTCATTGGTCGCTTGATGATTCAATGTGCTCGACAGCCTGGACTTGCACAGATTTGGGAAGATATACTTGGATTTGAAAATTGTGAATTCTACATCAAAAGATGGCCACAGTTGGAAGGCATGCAATTTGAGGATGTACTAATCAGCTTTCCTGCTGCAATTCCTTGTGGAATCAAAGTTGCATCATATGGCGGTAAAATTATTTTGAATCCAGATGACTCCTATGTTCTGCAAGAAGGTGACGAGATTCTGGTTATTGCAGAGGATGATGATACCTATGCCCCAGCATCCTTGCCTACGGTTTGGAGAGGAAGCTTACCCAAGGACTTTGTTTATCCAAAATCTCCAGAGAGAATACTTTTTTGTGGTTGGAGGCGTGATATGGAGGATATGATCATGGTTTTGGATGCATCTTTAGCACATGGGTCAGAACTCTGGATGTTCAATGATGTTCCAGAAAAAGAAAGAGAAAAGAAGCTAACTGATGGTGGCCTTGACATAAATCGATTGGAAAATATATCTCTGGTTAATCGTGAGGGGAATGCTGTTATACGTCGCCACTTGGAAAGCCTTCCATTGGAATCATTTGATTCAATATTGATTTTGGCTGATGAATCAGTAGAGGATTCAGCAATTCAAGCTGACTCTAGATCTCTTGCCACTCTACTTTTAATTCGTGACATACAAGCTAGGCGTCTTCCTTATGTATCTATGGCCAGTCAAGCTCACGGAGGAAGCTTCTCTAAAGGCTCATGGATTGGGGAAATGAAGCAGGCTTCGGATAAAACTGTTATAATTAGTGAAATTTTGGATCCTAGGACAAAAAATCTTATATCTATGTCAAAGATTAGTGATTATGTTTTATCAAATGAACTTGTCAGCATGGCTTTGGCCATGGTTGCAGAAGATCGGCAGATAAATGATGTATTGGAGGAGCTCTTTGCGGAGGAGGGAAATGAGATGCATATAAGGAAAGCAGATCTATACCTTTGTGAAGGTGAGGAATTGAATTTTTATGAAATAATGTTACGAGCTCGGCAGAGAAGAGAGATTGTGATAGGCTACCGTTTAGCGAATGCTGAAAGGGCAGTCATTAACCCCCCAGTGAAAACTGACAGACGGAAGTGGTCATTGAAGGATGTTTTTGTGGTGATTACTGAAAAGGAATGA

Predicted protein sequences of Glyma19g45310

Limit To All Plant Sequences

>Glyma19g45310.1   sequence type=predicted peptide   gene model=Glyma19g45310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLDSETSGSARDWFFPSPSFLRSSSSQYGRRFYSNSKPHSPPSSSTRIRHRRRVKFPRTPTNDKSQLSDTENVKSSATARNNLICLSQFRFQFALVTLTIVFLLLLLRNTHLESQVTKLQGEILGLNHRLHACHKLDTLYVTSSISQDVDPWSRENFKRNLALFFSFTLLFIPLLIFKYIGFVSKSRFSDNISEQVSLNKQIAYRVDVFLSVYPYAKPLVLLVATLLLIFLGGLALFGVTTEDLAHCLWLSWTYVADSGNHASSQGIGPRLVAVSISFGGMLIFAMMLGLVSDAISEKFDSLRKGKSEVVEQNHTLILGWSDKLGSLLNQLAIANESLGGGTVAVMAERDKEEMELDIAKMEFDFKGTSVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQSDARALRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLEGMQFEDVLISFPAAIPCGIKVASYGGKIILNPDDSYVLQEGDEILVIAEDDDTYAPASLPTVWRGSLPKDFVYPKSPERILFCGWRRDMEDMIMVLDASLAHGSELWMFNDVPEKEREKKLTDGGLDINRLENISLVNREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQARRLPYVSMASQAHGGSFSKGSWIGEMKQASDKTVIISEILDPRTKNLISMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRKADLYLCEGEELNFYEIMLRARQRREIVIGYRLANAERAVINPPVKTDRRKWSLKDVFVVITEKE*

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