SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72560 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:27325026-27329467 REVERSE LENGTH=988 | SoyBase | E_val: 0 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000049 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA binding | SoyBase | N/A | ISS |
| GO:0015932 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleobase-containing compound transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2021 | KOG | Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) | JGI | ISS | |
| PTHR15952 | Panther | EXPORTIN-T/LOS1 | JGI | ISS | |
| PTHR15952:SF11 | Panther | EXPORTIN-T | JGI | ISS | |
| PF08389 | PFAM | Exportin 1-like protein | JGI | ISS | |
| UniRef100_B9S5Q0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exportin-T, putative n=1 Tax=Ricinus communis RepID=B9S5Q0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NCU1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCU1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g45290 not represented in the dataset |
Glyma19g45290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g42510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g263400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g45290.2 sequence type=CDS gene model=Glyma19g45290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGATCTGGAGAGAGCGATTCTTGTTATATTTGATGAATCCGGAACCCTTGACGATGACTTGAAGAAACAGGCAGAACTTTACTGTAATGATGTTAAGGAGAAGCCTTTAATTTGTAGATTGTGCATTGAAAAATTATGCTTTTCAAATCTTGTTCAAGTCCAGTTTTGGTGCCTACAGACCTTGCATGAAGTCATTCGAACACGATACTTGACAATGACCCCAGATGAGAGGCACATGATCAGGGGCTCCGTCTTTTCAATTGTGTGCCTCGAAGACAAGAACCTCACAAGGGTTTTGGAAGGCCCTGCATTTATAAAGAACAAGCTTGCACAGGTTTTGATAACTTTGATTTACTTCGAGTACCCTTTGGTTTGGTCCTCCGTCTTTGTTGATTTTTTTCCACATTTGAGCAAAGGCAACGTGGTCATAGACATGTTCTGTAGAGTTTTGAATGCCCTGGATGATGAACTCATTAATTTGGACTACCCTAGAACCCCTGAGGAGTTGACAGTTGCGGGCCGGGTTAAGGACGCAATGAGACAGCAGTGTGTGTGTCAGATAGTTAGAGTTTGGTATGACATTGTTTCTATGTACCGGAATTCTGATCAGGAGCTATGCACTAGTGTGTTAGATTCCATGAGGAGATATATTTCTTGGATAGACATTGGGTTGATAGTCAATGATGCTTTCATCCCTTTGTTGTTTGATTTGATTTTGGTTGGTCCTCTGTCTGTTCAGCTTCGTGGTGCTGCAGTCAGATGCTTGTTAGCAGTTGTTTCTAAGCGAATGGAGCCCCAATCAAAACTGTCATTGTTGCGAAGCCTTCAAATTAGTCGGGTACTTAGGTTAGTGACCGAGGATGGTGATGCCGAGCTGGTCTCTGATATAGCTGCATTGCTTTCTGGGTATGCTGTGGAGGCTTTGGATTGCTTTAAACACTTAAATTCTGAGGATGCTAAAGGAATTTCTATGGAGCTTTTGAGTGAAGTTTTTCCCTCCATTTTCTATGTAATGAAGAATTTTGAGGTAGATGTCAATATCATTCAGTTTCTTTCAGGTTATGTTGCCATTTTGAAGAGCTTTGCTCCTTTGCCGGAGAAGCAACTACTTCACCTGGGACAAATATTGGAAGTTATCCTTGTGCTAATCCGTTATGACCCAGCATACCGCACTAATCTTGATTTCATGGACAAAATTGGTAAAGAGGAGGAAGATAGGATGGTAGAGTTCAGAAAGGATTTATTTGTTCTGCTTCGCACTGTGGGTCGTGTAGCGCCTGATGTAACTCAGTTGTTTATCAGAAATTCGTTGGCAAGTGCTGTTTCAAGATCTTCAGATAGCAATGTGGAGGAGGTGGAAGGTGCACTTTCTCTTTTATATGCACTTGGAGAATCCATAAGCGAGGAAACTATAAGAACTGGGAGTGGGTTGTTGAGTGAGCTGTTGCTTATGCTTCTATCGACAAAGTTTCCTTGTCACTCTAATAGGCTTGTCGCCCTTGTTTATTTGGAGACAGTGACAAGATATGTTAAGTTTATTCAGGATAATACTCAATATATTCCCATGGTTCTGGCTGCCTTTCTTGATGAAAGAGGCATACATCATTCAAACATCAATGTAAGTCGTAGAGCCAGTTATTTGTTTATGAGGGTTGTAAAATTGCTGAAGATGAAGTTGGTGCCTTTTATAGAGACTATTTTGCAGAGCCTGCAAGATACAGTTGCTCAATTCACTATTACGAATTATACGACAGAAGAGCTATCAGGATCAGAAGATGGTAGCCACATTTTTGAGGCAATTGGTTTATTGATTGGAACAGAAGATGTCCTGCCTGAAAAGCAATCTGATTATCTATCTTCTTTGCTCAGTCCTCTTTGTCAGCAGGTTGAGGCACTGCTAAAAAATGCCAAGTTATTGAATGCTGAGGAGACTAATGCTAAAATTGCTGTAACCCAGCAAATTATTATGGCAATTAATTCTCTCAGTAAGGGCTTTAGCGAGCGTCTTGTAACTGCTAGTCGCCCTGCAATTGGTCTCATGTTTAAGCAGACATTGGATGTACTTCTTCAAGTTCTTGTTATATTTCCAAAAGTAGAACCTCTGCGAAACAAGGTCACATCTTTTATACACCGGATGGTGGATACACTAGGAGCATCTGTTTTTCCTTACCTTCCAAAGGCATTGGAGCAGTTGCTTGAAGAAATAGAAGTCAACAAATACAGAATCACACCCTAA
>Glyma19g45290.2 sequence type=predicted peptide gene model=Glyma19g45290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDLERAILVIFDESGTLDDDLKKQAELYCNDVKEKPLICRLCIEKLCFSNLVQVQFWCLQTLHEVIRTRYLTMTPDERHMIRGSVFSIVCLEDKNLTRVLEGPAFIKNKLAQVLITLIYFEYPLVWSSVFVDFFPHLSKGNVVIDMFCRVLNALDDELINLDYPRTPEELTVAGRVKDAMRQQCVCQIVRVWYDIVSMYRNSDQELCTSVLDSMRRYISWIDIGLIVNDAFIPLLFDLILVGPLSVQLRGAAVRCLLAVVSKRMEPQSKLSLLRSLQISRVLRLVTEDGDAELVSDIAALLSGYAVEALDCFKHLNSEDAKGISMELLSEVFPSIFYVMKNFEVDVNIIQFLSGYVAILKSFAPLPEKQLLHLGQILEVILVLIRYDPAYRTNLDFMDKIGKEEEDRMVEFRKDLFVLLRTVGRVAPDVTQLFIRNSLASAVSRSSDSNVEEVEGALSLLYALGESISEETIRTGSGLLSELLLMLLSTKFPCHSNRLVALVYLETVTRYVKFIQDNTQYIPMVLAAFLDERGIHHSNINVSRRASYLFMRVVKLLKMKLVPFIETILQSLQDTVAQFTITNYTTEELSGSEDGSHIFEAIGLLIGTEDVLPEKQSDYLSSLLSPLCQQVEALLKNAKLLNAEETNAKIAVTQQIIMAINSLSKGFSERLVTASRPAIGLMFKQTLDVLLQVLVIFPKVEPLRNKVTSFIHRMVDTLGASVFPYLPKALEQLLEEIEVNKYRITP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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