Glyma19g45260 - SoyBase

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Report for Sequence Feature Glyma19g45260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50448994
stop:	50455339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g45260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13420	AT	Annotation by Michelle Graham. TAIR10: high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785	SoyBase	E_val: 0	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0009674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium:sodium symporter activity	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02705	PFAM	K+ potassium transporter	JGI		ISS
UniRef100_I1NCT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCT8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5MWW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: High-affinity K+ transporter n=1 Tax=Capsicum annuum RepID=Q5MWW0_CAPAN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g45260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g45260

Paralog	Evidence	Comments
Glyma03g42480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g45260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g263100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g45260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g45260

Limit To All Plant Sequences

>Glyma19g45260.1   sequence type=CDS   gene model=Glyma19g45260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAGAAGCAGATCGAACGAGCATTGAGGAAGAGATGGACACAGGAAAGGAGACTGCAGAGAAGAACCTGAAGCTCAAAGACCGAAAGGTATCATGGGCAAAGCTACGCCGCGTAGATTCTCTCAATTTAGAAGCTGGAAGAGTTTCTACGGTTGCTCACAACCCCTACCAGATGGGTTGGAGGACGACGCTGATCTTAGCATTTCAAAGCATAGGGGTGGTATACGGTGATATTGGTACATCACCACTTTATGTGTATGCAAGCACCTTCACTAAAAAAATTAACAACAATGATGACATTCTTGGCGTCTTGTCTCTCATCATCTATACCATCGTGCTCATACCTTTGCTTAAATATGTCTTCATCGTATTGTGGGCCAACGACAACGGCAACGGTGGAGCGTTTGCACTCTATTCGCTAATCTGTAGGCATATAAAGATGAGTTTGATTCCAAATCAAGAACCAGAGGACAGGGAGCTTTCTAACTACAAACTTGAAACACCGTCTACTGAGTTTAAACGAGCCCAGAAACTAAAGCAGAAGCTTGAGGGCAGTCATGTTGCGCGGGTTGTGCTTATTCTTCTAGCTATAGTGGGAACTTCCATGGTCATAGGAGACGGGATTCTTACACCGTCAATCTCAGTCCTTTCTGCGGTCAGTGGGATCAGTACATCTTTAGGTCAAGATGCTGTTGTGGGGATCACTATAGCAATCTTGGCAGTCCTATTTTATGTGCAACGATTTGGTACAGATAAAGTGGGGTTCGCATTCGCTCCAATAATTTTGGTGTGGTTTTTATTCATTGGTGGAATTGGCCTTTACAATTTATTTAAATATGACATTGGCGTATTACGTGCTTTTAATCCAAAATATATATATGATTACTTCAAACGGAACGGCAAGGAAGGATGGATATCACTTGGTGGAGTCTTTTTGTGCATAACAGGATCCGAGGCCATGTTTGCTGACTTGGGTCACTTTAATGTACGATCCATTCAAATTAGCTTTTCTTGCATCACATTTCCTGCAATAGTGGCTGCATATATTGGGCAAGCAGCATTTCTACGGAAGTTCCCTGAGAAAGTGGCCAATACTTTCTATGATAGTATACCGGATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCTAAGTCTAGGTTGTTTCCCAAGAGTTAGGGTAGTGCACACTTCCATTAAACATCAGGGTCAGGTGTATATTCCTGAGGTCAACTACATGTTCATGATTGCATGTATTGTGGTCTGTGCTGCCTTCAAGACCACAGAAAAGATTAGCCATGCATATGGGATTGCAGTTATTGGTGATATGATGATCACAACAACACTAGTTTCGCTAATAATGCTTGTTTTGTGGAAAAAGAGTCTGTGGCGAGTGGGTCTGTTCTTTTTGGGATTCGGTTTCGTTGAGATTGTTTATTTCTCTTCTCAACTAACCAAGTTTACAGGAGGAGGGTATCTTCCAATAGTATCAGCTATGTTCTTGACGGCAGTGATGGGAATCTGGCATTATGTGCACAAAGAAAGATACATGTTTGAATTGAAAAACAAGGTTTCGAGTGCGTATTTGAATGAACTGGCCAACAACCCAGACGTAAGGAGAGTGCCCGGAATAGGACTTCTGTACTCAGAGCTAGTACAAGGCATTCCTCCCATATTCCAACACTTAATAGACAACATACCATCTATCCATTCAATTATTGTGTTTGTCTCCATCAAGGCAATTCCTGTTAGTAGAGTTGCATCAGAGGAGCGCTTTTTGTTTCGGCAGGTGGAGCCGAGAGATTACAGAGTTTTTCGTTGTGTTGTGAGGCATGGTTACAATGACGTGCTTGAGGATCCTGCAGAGTTTGAGTCACACTTGATACAAAATCTCAAGGCATTCGTTCAACATGAGAACTATATGCTCGAGGTTGATGGAACTGAACACGCATCAGCTGAGACTGAGATGATAGCAGCAGTAGGTAAGGGTTCTTCCAACAGAATAATCCCAGATCAAGCTGCAGCCTCATCCGACTCCATTCGATCATTGGGGGCCAGTGCGACCAAGTCATCCTCTTTCATTTCCCCACCCATCCAGGGAGCTGAAGACGAAATCAAATTCATAGACAAAGCATTGGAGAAGGGCGTCGTCTATATGCTAGCAGAAGCAGAGGTAGTTGCTCACCCATCTTCCTCCATCTTGAATAAGATTGTTGTCAACTATGTTTATAGCTTCTTCAGAAAGAACTTTAGACAAGGCCAGAATTCCATGGCAATCCAACGCAACAGACTTCTCAAGGTTGGAATGACTTATGAAATATGA

Predicted protein sequences of Glyma19g45260

Limit To All Plant Sequences

>Glyma19g45260.1   sequence type=predicted peptide   gene model=Glyma19g45260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEADRTSIEEEMDTGKETAEKNLKLKDRKVSWAKLRRVDSLNLEAGRVSTVAHNPYQMGWRTTLILAFQSIGVVYGDIGTSPLYVYASTFTKKINNNDDILGVLSLIIYTIVLIPLLKYVFIVLWANDNGNGGAFALYSLICRHIKMSLIPNQEPEDRELSNYKLETPSTEFKRAQKLKQKLEGSHVARVVLILLAIVGTSMVIGDGILTPSISVLSAVSGISTSLGQDAVVGITIAILAVLFYVQRFGTDKVGFAFAPIILVWFLFIGGIGLYNLFKYDIGVLRAFNPKYIYDYFKRNGKEGWISLGGVFLCITGSEAMFADLGHFNVRSIQISFSCITFPAIVAAYIGQAAFLRKFPEKVANTFYDSIPDPLYWPTFVVAVAAAIIASQAMISGAFSIISQALSLGCFPRVRVVHTSIKHQGQVYIPEVNYMFMIACIVVCAAFKTTEKISHAYGIAVIGDMMITTTLVSLIMLVLWKKSLWRVGLFFLGFGFVEIVYFSSQLTKFTGGGYLPIVSAMFLTAVMGIWHYVHKERYMFELKNKVSSAYLNELANNPDVRRVPGIGLLYSELVQGIPPIFQHLIDNIPSIHSIIVFVSIKAIPVSRVASEERFLFRQVEPRDYRVFRCVVRHGYNDVLEDPAEFESHLIQNLKAFVQHENYMLEVDGTEHASAETEMIAAVGKGSSNRIIPDQAAASSDSIRSLGASATKSSSFISPPIQGAEDEIKFIDKALEKGVVYMLAEAEVVAHPSSSILNKIVVNYVYSFFRKNFRQGQNSMAIQRNRLLKVGMTYEI*

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