Glyma19g45200 - SoyBase

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Report for Sequence Feature Glyma19g45200

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50423588
stop:	50425120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g45200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14230	AT	Annotation by Michelle Graham. TAIR10: related to AP2 2 \| chr3:4737616-4739000 REVERSE LENGTH=374	SoyBase	E_val: 3.00E-47	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B2ZRG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EREBP/AP2 transcription factor n=1 Tax=Glycine max RepID=B2ZRG3_SOYBN	SoyBase	E_val: 4.00E-164	ISS
UniRef100_UPI000233F029	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F029 related cluster n=1 Tax=unknown RepID=UPI000233F029	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g45200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g45200

Paralog	Evidence	Comments
Glyma03g42450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g45200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g262700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g45200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g45200

Limit To All Plant Sequences

>Glyma19g45200.2   sequence type=CDS   gene model=Glyma19g45200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGAGGCGCTATCATCTCTGACTTCATTCTCCTTTTTGAGACTTCTAATATCCTCAGGGTTTTTTGGGAGAATTGGCTAAAAAATGGGTCTACCACAGCGAAATCTGTGGCATTCCAAGTTCGAGCTGAGAAATTTGCAAATAGGAAGAGGAAAAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCTAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGAGGCACCAGGTACTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTGAGTCACAAGTTCGGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTATGCTAACATGGCTTCCTTCCCTGGAAGTGGAAATGGGCTCACATCCCTTCCGTCATCTGATGATGTCACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGGGTGGAGTGAACAGGGCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCCTAACTCTCAGAATGTGGTATCTATGGAAGATGATTCTGCAAAGAGACTCTCTGAGGAGCGTGTGGATATCGAATCTGAGTTGAAGTTCTTTCAGATGGCTTATCTTGAAGGGAGCTGGGGCGATACTTCGTTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGTCTAGCGGAGTTTTCTGA

Predicted protein sequences of Glyma19g45200

Limit To All Plant Sequences

>Glyma19g45200.2   sequence type=predicted peptide   gene model=Glyma19g45200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFILLFETSNILRVFWENWLKNGSTTAKSVAFQVRAEKFANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPGTSVKRSKVNPQENLSHKFGAGNNHMDLVEQKPLVNQYANMASFPGSGNGLTSLPSSDDVTLYFSSDQGSNSFGWSEQGPKTPEISSMLSAPLDCESHFVQNANQQPNSQNVVSMEDDSAKRLSEERVDIESELKFFQMAYLEGSWGDTSLESLLSGDTTQDGGNLMNLWSFDDIPSMSSGVF*

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