SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53750 | AT | Annotation by Michelle Graham. TAIR10: regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008540 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0729 | KOG | 26S proteasome regulatory complex, ATPase RPT1 | JGI | ISS | |
| PTHR23073 | Panther | 26S PROTEASE REGULATORY SUBUNIT | JGI | ISS | |
| PTHR23073:SF13 | Panther | 26S PROTEASE REGULATORY SUBUNIT 7 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_I1NCS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCS8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q41365 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S protease regulatory subunit 7 n=1 Tax=Spinacia oleracea RepID=PRS7_SPIOL | SoyBase | E_val: 0 | ISS |
|
Glyma19g45140 not represented in the dataset |
Glyma19g45140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g42370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g261800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g45140.1 sequence type=CDS gene model=Glyma19g45140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTGAACATGAAGACGATTTCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTTCTCAAAACCTATGGTTTGGGGCCTTATTCCACAAGCATAAAAAAAGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAAATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTCGTTAAGCTAGGAATTGATCCTCCAAAGGGTGTTCTTTGCTATGGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCAATTGGGGGTGCACGGTTTGATGATGGTGTTGGCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCAAAGTATATGGTCTACAACTGA
>Glyma19g45140.1 sequence type=predicted peptide gene model=Glyma19g45140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEHEDDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
