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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g45111

Feature Type:gene_model
Chromosome:Gm19
Start:50356004
stop:50363782
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63140AT Annotation by Michelle Graham. TAIR10: purple acid phosphatase 29 | chr5:25328237-25329616 FORWARD LENGTH=389 SoyBaseE_val: 2.00E-177ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003993GO-mf Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG1432 KOG Predicted DNA repair exonuclease SIA1 JGI ISS
PF00149PFAM Calcineurin-like phosphoesterase JGI ISS
UniRef100_B9RMZ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphatase DCR2, putative n=1 Tax=Ricinus communis RepID=B9RMZ0_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EEC6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EEC6 related cluster n=1 Tax=unknown RepID=UPI000233EEC6 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g45111 not represented in the dataset

Glyma19g45111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g42320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g261500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g45111.2   sequence type=transcript   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAATTTATAAAAAGCATGCTTAAGCCAAAAAAAAAAATCCTCTACTTGTTGATCTGCATTCCTTGTTGTCGTCTGGCATGTCTTCATCCAAACAGTGAAACTGACTTGACGATAAAGAAGCATTTCCATCAATTGAAGTGATGATTGAGAGTGGGTATGGCACTCAGACTCAGAGGAAAATGGGTTTTGATTCCATTCTTTTGGTTTTGCCTGATTCCGTTTTGCTTCTCACAACAGAAGCTGCGCTTGCGCTTTGGAAAAAATGGAGAGTTCAAGATCTTGCAAATTGCTGACTTGCACTTTGCCAATGGGAAGACTACCCACTGCTTGGATGTGCTTCCTTCTCAGTATGCTTCTTGCTCTGACCTCAACACCACCGCCTTCATCCAAAGGATCATCCTTTCTGAGAAACCTAACCTTATTGTCTTCACTGGAGATAATATATTTGGATATGATGCTTCGGATCCAGCTAAATCAATGGATGCAGCATTTGCACCTGCAATTGCTTCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGATCAGGAAGGATCCCTCTCAAGGGAAGGAGTGATAAAATATATCGCTGGGATGAAAAATACTTTATCTATAGTCAATCCTCCGGAAGTACACATAATTGATGGTTTTGGGAACTATAACTTAGAGGTTGGAGGAGTTGAAGGCACTGATTTTGAAAACAAATCAGTGCTTAATCTGTACTTTCTTGATAGTGGAGATTACTCTAAGGTTCCTTTTATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCAACGGACATCTCAAAAGCTTAGGGAAGCATACATGAATGGACCAGTGTCTCAGAAAGAACCTGCTCCTGGACTTGCATACTTTCACATCCCGCTACCCGAATATGCTAGTTTTGACTCATCAAACTTCACAGGTGTGAAACAAGAAGGCATAAGTTCTGCTTCTGTGAATTCTGGCTTCTTCACAACATTGGTTGAAGCAGGAGATGTGAAGGCAGTTTTCACTGGCCATGATCATGTCAATGACTTCTGTGGCAAGCTAACGGGTATACATCTTTGTTATGCTGGGGGATTTGGATATCACGCTTATGGAAAAGCTGGATGGTCCAGGAGAGCAAGAGTGGTGCTAGTTAGCCTGGAGAAAACAGATAATGGCCGTTGGGAAGATGTCAAATCAATTAAAACATGGAAGCGCCTTGATGATCAAAATCTAACTGGTATTGATGGTCAGGTCTTATGGAGCAAGAGCTTTGGCAGCAACCGCAGGAAAAAACAAGATGATGGCTCTTAAGAATTTGCATGATGCGGAAAATATGTTAGTAGCATGAAAGGATATTTTGGAATGACCAATTATGTTTTGTCCACGTATTTTTTATTTTTTATTTTATCAAATTAACCCGTTTACTACTTGTCCTATAATCAAGATTCAGAATGCAACAATACAAGGTAGCTTGGGCAAAAAAGAATATATAAAAGGGATTGAAGTTCATTAATGTGGTGCAATGACTGTATGCTATGCGATTGCAATCGTCTGTTCACTCATGTAAATTTCATGATGTCCATGTCTTTAATTTGTTCTTAGTTGCAGCCTCAACATGAAAGGTTTCTTTTAGAACATTGTAGATGTAATGCACCATGAATTGAGAGTAGATTTCTACTTGTTTTGCATGAATCTTTATGCTACCTGATAGTGATAAAACGTTTGCTATAAATTCAAAAAGTCACACCGCAATGGCAAATACTGTATGCAATTTATC

>Glyma19g45111.3   sequence type=transcript   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGATCTGCATTCCTTGTTGTCGTCTGGCATGTCTTCATCCAAACAGTGAAACTGACTTGACGATAAAGAAGCATTTCCATCAATTGAAGTGATGATTGAGAGTGGAAGCTGCGCTTGCGCTTTGGAAAAAATGGAGAGTTCAAGATCTTGCAAATTGCTGACTTGCACTTTGCCAATGGGAAGACTACCCACTGCTTGGATGTGCTTCCTTCTCAGTATGCTTCTTGCTCTGACCTCAACACCACCGCCTTCATCCAAAGGATCATCCTTTCTGAGAAACCTAACCTTATTGTCTTCACTGGAGATAATATATTTGGATATGATGCTTCGGATCCAGCTAAATCAATGGATGCAGCATTTGCACCTGCAATTGCTTCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGATCAGGAAGGATCCCTCTCAAGGGAAGGAGTGATAAAATATATCGCTGGGATGAAAAATACTTTATCTATAGTCAATCCTCCGGAAGTACACATAATTGATGGTTTTGGGAACTATAACTTAGAGGTTGGAGGAGTTGAAGGCACTGATTTTGAAAACAAATCAGTGCTTAATCTGTACTTTCTTGATAGTGGAGATTACTCTAAGGTTCCTTTTATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCAACGGACATCTCAAAAGCTTAGGGAAGCATACATGAATGGACCAGTGTCTCAGAAAGAACCTGCTCCTGGACTTGCATACTTTCACATCCCGCTACCCGAATATGCTAGTTTTGACTCATCAAACTTCACAGGTGTGAAACAAGAAGGCATAAGTTCTGCTTCTGTGAATTCTGGCTTCTTCACAACATTGGTTGAAGCAGGAGATGTGAAGGCAGTTTTCACTGGCCATGATCATGTCAATGACTTCTGTGGCAAGCTAACGGGTATACATCTTTGTTATGCTGGGGGATTTGGATATCACGCTTATGGAAAAGCTGGATGGTCCAGGAGAGCAAGAGTGGTGCTAGTTAGCCTGGAGAAAACAGATAATGGCCGTTGGGAAGATGTCAAATCAATTAAAACATGGAAGCGCCTTGATGATCAAAATCTAACTGGTATTGATGGTCAGGTCTTATGGAGCAAGAGCTTTGGCAGTAAGATATCTCTGGATTCTGGAATACTTGGTGTACTCTATTTCTTGATTTCAAACTTGTGCTACAGACTAATAGATGAAATCTATCTTTAGAAATTACATATAATGTAGCAGATGCCAACTGGAGACTG

>Glyma19g45111.1   sequence type=CDS   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAGACTCAGAGGAAAATGGGTTTTGATTCCATTCTTTTGGTTTTGCCTGATTCCGTTTTGCTTCTCACAACAGAAGCTGCGCTTGCGCTTTGGAAAAAATGGAGAGTTCAAGATCTTGCAAATTGCTGACTTGCACTTTGCCAATGGGAAGACTACCCACTGCTTGGATGTGCTTCCTTCTCAGTATGCTTCTTGCTCTGACCTCAACACCACCGCCTTCATCCAAAGGATCATCCTTTCTGAGAAACCTAACCTTATTGTCTTCACTGGAGATAATATATTTGGATATGATGCTTCGGATCCAGCTAAATCAATGGATGCAGCATTTGCACCTGCAATTGCTTCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGATCAGGAAGGATCCCTCTCAAGGGAAGGAGTGATAAAATATATCGCTGGGATGAAAAATACTTTATCTATAGTCAATCCTCCGGAAGTACACATAATTGATGGTTTTGGGAACTATAACTTAGAGGTTGGAGGAGTTGAAGGCACTGATTTTGAAAACAAATCAGTGCTTAATCTGTACTTTCTTGATAGTGGAGATTACTCTAAGGTTCCTTTTATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCAACGGACATCTCAAAAGCTTAGGGAAGCATACATGAATGGACCAGTGTCTCAGAAAGAACCTGCTCCTGGACTTGCATACTTTCACATCCCGCTACCCGAATATGCTAGTTTTGACTCATCAAACTTCACAGGTGTGAAACAAGAAGGCATAAGTTCTGCTTCTGTGAATTCTGGCTTCTTCACAACATTGGTTGAAGCAGGAGATGTGAAGGCAGTTTTCACTGGCCATGATCATGTCAATGACTTCTGTGGCAAGCTAACGGGTATACATCTTTGTTATGCTGGGGGATTTGGATATCACGCTTATGGAAAAGCTGGATGGTCCAGGAGAGCAAGAGTGGTGCTAGTTAGCCTGGAGAAAACAGATAATGGCCGTTGGGAAGATGTCAAATCAATTAAAACATGGAAGCGCCTTGATGATCAAAATCTAACTGGTATTGATGGTCAGGTCTTATGGAGCAAGAGCTTTGGCAGTAAGATATCTCTGGATTCTGGAATACTTGGTGTACTCTATTTCTTGATTTCAAACTTGTGCTACAGACTAATAGATGAAATCTATCTTTAG

>Glyma19g45111.2   sequence type=CDS   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAGACTCAGAGGAAAATGGGTTTTGATTCCATTCTTTTGGTTTTGCCTGATTCCGTTTTGCTTCTCACAACAGAAGCTGCGCTTGCGCTTTGGAAAAAATGGAGAGTTCAAGATCTTGCAAATTGCTGACTTGCACTTTGCCAATGGGAAGACTACCCACTGCTTGGATGTGCTTCCTTCTCAGTATGCTTCTTGCTCTGACCTCAACACCACCGCCTTCATCCAAAGGATCATCCTTTCTGAGAAACCTAACCTTATTGTCTTCACTGGAGATAATATATTTGGATATGATGCTTCGGATCCAGCTAAATCAATGGATGCAGCATTTGCACCTGCAATTGCTTCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGATCAGGAAGGATCCCTCTCAAGGGAAGGAGTGATAAAATATATCGCTGGGATGAAAAATACTTTATCTATAGTCAATCCTCCGGAAGTACACATAATTGATGGTTTTGGGAACTATAACTTAGAGGTTGGAGGAGTTGAAGGCACTGATTTTGAAAACAAATCAGTGCTTAATCTGTACTTTCTTGATAGTGGAGATTACTCTAAGGTTCCTTTTATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCAACGGACATCTCAAAAGCTTAGGGAAGCATACATGAATGGACCAGTGTCTCAGAAAGAACCTGCTCCTGGACTTGCATACTTTCACATCCCGCTACCCGAATATGCTAGTTTTGACTCATCAAACTTCACAGGTGTGAAACAAGAAGGCATAAGTTCTGCTTCTGTGAATTCTGGCTTCTTCACAACATTGGTTGAAGCAGGAGATGTGAAGGCAGTTTTCACTGGCCATGATCATGTCAATGACTTCTGTGGCAAGCTAACGGGTATACATCTTTGTTATGCTGGGGGATTTGGATATCACGCTTATGGAAAAGCTGGATGGTCCAGGAGAGCAAGAGTGGTGCTAGTTAGCCTGGAGAAAACAGATAATGGCCGTTGGGAAGATGTCAAATCAATTAAAACATGGAAGCGCCTTGATGATCAAAATCTAACTGGTATTGATGGTCAGGTCTTATGGAGCAAGAGCTTTGGCAGCAACCGCAGGAAAAAACAAGATGATGGCTCTTAA

>Glyma19g45111.3   sequence type=CDS   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGCATTTGCACCTGCAATTGCTTCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGATCAGGAAGGATCCCTCTCAAGGGAAGGAGTGATAAAATATATCGCTGGGATGAAAAATACTTTATCTATAGTCAATCCTCCGGAAGTACACATAATTGATGGTTTTGGGAACTATAACTTAGAGGTTGGAGGAGTTGAAGGCACTGATTTTGAAAACAAATCAGTGCTTAATCTGTACTTTCTTGATAGTGGAGATTACTCTAAGGTTCCTTTTATTCCTGGCTATGGCTGGATCAAACCCTCTCAGCAACTTTGGTTCCAACGGACATCTCAAAAGCTTAGGGAAGCATACATGAATGGACCAGTGTCTCAGAAAGAACCTGCTCCTGGACTTGCATACTTTCACATCCCGCTACCCGAATATGCTAGTTTTGACTCATCAAACTTCACAGGTGTGAAACAAGAAGGCATAAGTTCTGCTTCTGTGAATTCTGGCTTCTTCACAACATTGGTTGAAGCAGGAGATGTGAAGGCAGTTTTCACTGGCCATGATCATGTCAATGACTTCTGTGGCAAGCTAACGGGTATACATCTTTGTTATGCTGGGGGATTTGGATATCACGCTTATGGAAAAGCTGGATGGTCCAGGAGAGCAAGAGTGGTGCTAGTTAGCCTGGAGAAAACAGATAATGGCCGTTGGGAAGATGTCAAATCAATTAAAACATGGAAGCGCCTTGATGATCAAAATCTAACTGGTATTGATGGTCAGGTCTTATGGAGCAAGAGCTTTGGCAGTAAGATATCTCTGGATTCTGGAATACTTGGTGTACTCTATTTCTTGATTTCAAACTTGTGCTACAGACTAATAGATGAAATCTATCTTTAG

>Glyma19g45111.1   sequence type=predicted peptide   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRGKWVLIPFFWFCLIPFCFSQQKLRLRFGKNGEFKILQIADLHFANGKTTHCLDVLPSQYASCSDLNTTAFIQRIILSEKPNLIVFTGDNIFGYDASDPAKSMDAAFAPAIASNIPWVAVLGNHDQEGSLSREGVIKYIAGMKNTLSIVNPPEVHIIDGFGNYNLEVGGVEGTDFENKSVLNLYFLDSGDYSKVPFIPGYGWIKPSQQLWFQRTSQKLREAYMNGPVSQKEPAPGLAYFHIPLPEYASFDSSNFTGVKQEGISSASVNSGFFTTLVEAGDVKAVFTGHDHVNDFCGKLTGIHLCYAGGFGYHAYGKAGWSRRARVVLVSLEKTDNGRWEDVKSIKTWKRLDDQNLTGIDGQVLWSKSFGSKISLDSGILGVLYFLISNLCYRLIDEIYL*

>Glyma19g45111.2   sequence type=predicted peptide   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRGKWVLIPFFWFCLIPFCFSQQKLRLRFGKNGEFKILQIADLHFANGKTTHCLDVLPSQYASCSDLNTTAFIQRIILSEKPNLIVFTGDNIFGYDASDPAKSMDAAFAPAIASNIPWVAVLGNHDQEGSLSREGVIKYIAGMKNTLSIVNPPEVHIIDGFGNYNLEVGGVEGTDFENKSVLNLYFLDSGDYSKVPFIPGYGWIKPSQQLWFQRTSQKLREAYMNGPVSQKEPAPGLAYFHIPLPEYASFDSSNFTGVKQEGISSASVNSGFFTTLVEAGDVKAVFTGHDHVNDFCGKLTGIHLCYAGGFGYHAYGKAGWSRRARVVLVSLEKTDNGRWEDVKSIKTWKRLDDQNLTGIDGQVLWSKSFGSNRRKKQDDGS*

>Glyma19g45111.3   sequence type=predicted peptide   gene model=Glyma19g45111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAAFAPAIASNIPWVAVLGNHDQEGSLSREGVIKYIAGMKNTLSIVNPPEVHIIDGFGNYNLEVGGVEGTDFENKSVLNLYFLDSGDYSKVPFIPGYGWIKPSQQLWFQRTSQKLREAYMNGPVSQKEPAPGLAYFHIPLPEYASFDSSNFTGVKQEGISSASVNSGFFTTLVEAGDVKAVFTGHDHVNDFCGKLTGIHLCYAGGFGYHAYGKAGWSRRARVVLVSLEKTDNGRWEDVKSIKTWKRLDDQNLTGIDGQVLWSKSFGSKISLDSGILGVLYFLISNLCYRLIDEIYL*







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