Glyma19g45090 - SoyBase

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Report for Sequence Feature Glyma19g45090

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50336441
stop:	50342221
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g45090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46870	AT	Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein \| chr2:19261313-19262245 FORWARD LENGTH=310	SoyBase	E_val: 8.00E-79	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
UniRef100_G8A0L2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Maturase K n=1 Tax=Medicago truncatula RepID=G8A0L2_MEDTR	SoyBase	E_val: 1.00E-97	ISS
UniRef100_I1NCS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g45090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g45090

Paralog	Evidence	Comments
Glyma03g42301	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g45090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g261300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g45090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g45090

Limit To All Plant Sequences

>Glyma19g45090.2   sequence type=transcript   gene model=Glyma19g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGCCTGCAGGGCAGGGTGGTCTGTTTTTCATTTTTTCTTAGTTTAGCCATTTGCTTTTCTTTTTCTTACCTTACGGCCGGGGACCATCCACAACACACTCAATCAATGGCACTAAAAGTCAAAAAAATAAGCGTACACTCTATCCCCTCCTCTCTCTCTCTCTACTATACCATTGGCCTTTCCCTCTGCTACAACTAGCTATATATATAGTCATAGTTAAGCCCTTACCCATATATATAAGCTATAACAAGAATAATTAACCAATATCATTGCTCCATATATTAATATTTTTCTGCTTTGACAATAAAACGAGAGTGCAAGGGCAAATTTAACACAGTTAGGTTAAGCTCATTGCTTCTGGAACAACTGGCCTTTTGGTCTCAACCCGGAAGCATATGTACTGTACAGATTATACCAAATATGATGAAAACGACAAGTTGCTCACATGACCACAATAGGCACATTATTCATGGCCCCCACGTAAGTGTAGCAATCCTCTCTATCTACCTTTCTCTCTCTCCGAAGAATAAAACTGGGTTGCAAGAAATATTTTTGCTTCTTTTCCTAGTTAATTGTAGAGAACCTTCGTGTGAGGTCAACAGTAACAATACCATGACCCCTTTTTGAATCCTCCATATTCATTCCAATATGGCTTGTCTTTCTTTAGGGTTTGGATTTGGAGGCTTGTGGTCAACTAAGAAGGCACCAACTGTTTTAATTTTTGTGTACTAAGAGCCTGTTTTTGTTTTTCTGTAGAGCCTCAGCAATCTGGCCTGAATTCAAGGTAGGTCAGCCACAATTAACTGATCCATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGGCTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAAGGGAAGTTGCAACAAGGAGGTGGAGGTGGAGGAGTGGTTCATCATGCTCATGAAATAGTGGAGAAAGAGAATATGTTTGAGAAAGTGGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCATCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACTAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATAGATTGTACATAGATTGGAGGAAAAGGTCTGCTCATCCTCATGCTCATCATCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAATCTCTTCACTTTCCAGCAACACCAGTACCAGCTTGGTGCTGCCACAGCCGCTGCCACTGCTGCTCATCATGGTGACCAGAATTCGGGATCTGGGTCACTCTATTACCTAAGGTCCTCCATGTCAATGGGTGGCGGTGATCAAAACTTGCAAGGACGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAGCGTTGGCCATCACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTGCTACTAGTAGTGGAAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGTCCTCGGGTTCGGCAGCACATGTGACGACAGCTGCTTCTTCTTCTCTTCATCAGCGCTTGAGGTTGCCACTGCCACATGAAGACCCACTTTCGTCGTCGTCAGCGAGGTTTGGGGATCACAAAGGGGGCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGGCAGTGATCGATCAAATAAAATAATATATTCAACGCCACCAATAATGAATGGAGAAGATTTAGTTTCAAAGTTAGTTGGGCTAGCTACCCTCTCTTTTGCAGCATTTTTACTTATTCTCTTTCTCTCAACAGCTAGCTATAAAGGAATCAGCTCCCAAACTTTCTTTTTCTCCTCCTCCTTCTTCTCCTTTTTATCAGTAATTAGTACGTATAAGTTAGCATTTCAACTTCTTGGTACCTTTTGAACTGCACGAAGCGTTAATTAGCTGGGGATTCGAGTCTTGAAGGAAAAGAAAAATCGTTTCATGACCAAGAGACAGAATGTTATCTCCCTTAGACCTTTCAATTGTGTATAATACAATACGTATATAATTTATCATAAATATTACTCTAGTAGTATATGGTTTCTGTCCCCTTTTTTTATTGCATTGGTATATACTGTTAACTGTACTCTCTCTCTTTCCGTTCACTGCATTTAATGATACACAGAAAAGCTTGTTGCTTTCTTCTATCCTCTAATGTTTCTGTTAGCCTTGTTGGGTTGATGCCGTTCACAACACTGATGCTTCTGCTGCTGCTTAATTCGCATTTTCGCTTTGCAGATAAGGAGCAGAAAGTTGTACAGCTGTAAAATGTCGCCTTCTTGTCTGGATCAGCACTGCTCACGAACACGTGGTTTTGGATAAATAGATGTGCATATGAGGGGATTTCTTTCCCCTTCTCCCAAGGGTTAAAAGAAAGGCTAGCGGAAAAATAAAAGCAACAGCCAACCACACTTTCTTAACCGAGGATAAATTAAAGATCTGTTGCTCGACATTTCATCAGTGCGATTTAGGAACATTTAGCCAAGTAGGTATGATTTTTCAATATGTATACATATGCGCTTTTTCTTCAGGGATGACAAGGTTCCGTCACTAGCATTTAGGTTATGAAATTATATATTGCTTGCATTAATCATCAATATATAATTGCACTCAAATATATGTTTAGTCTAAAATCCAGGAGTAAAATGTAATTGCCTCGTATATATATATATATAT

Coding sequences of Glyma19g45090

Limit To All Plant Sequences

>Glyma19g45090.1   sequence type=CDS   gene model=Glyma19g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGGCTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAAGGGAAGTTGCAACAAGGAGGTGGAGGTGGAGGAGTGGTTCATCATGCTCATGAAATAGTGGAGAAAGAGAATATGTTTGAGAAAGTGGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCATCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACTAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATAGATTGTACATAGATTGGAGGAAAAGGTCTGCTCATCCTCATGCTCATCATCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAATCTCTTCACTTTCCAGCAACACCAGTACCAGCTTGGTGCTGCCACAGCCGCTGCCACTGCTGCTCATCATGGTGACCAGAATTCGGGATCTGGGTCACTCTATTACCTAAGGTCCTCCATGTCAATGGGTGGCGGTGATCAAAACTTGCAAGGACGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAGCGTTGGCCATCACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTGCTACTAGTAGTGGAAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGTCCTCGGGTTCGGCAGCACATGTGACGACAGCTGCTTCTTCTTCTCTTCATCAGCGCTTGAGGTTGCCACTGCCACATGAAGACCCACTTTCGTCGTCGTCAGCGAGGTTTGGGGATCACAAAGGGGGCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGGCAGTGA

>Glyma19g45090.2   sequence type=CDS   gene model=Glyma19g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGGCTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAAGGGAAGTTGCAACAAGGAGGTGGAGGTGGAGGAGTGGTTCATCATGCTCATGAAATAGTGGAGAAAGAGAATATGTTTGAGAAAGTGGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCATCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACTAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATAGATTGTACATAGATTGGAGGAAAAGGTCTGCTCATCCTCATGCTCATCATCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAATCTCTTCACTTTCCAGCAACACCAGTACCAGCTTGGTGCTGCCACAGCCGCTGCCACTGCTGCTCATCATGGTGACCAGAATTCGGGATCTGGGTCACTCTATTACCTAAGGTCCTCCATGTCAATGGGTGGCGGTGATCAAAACTTGCAAGGACGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAGCGTTGGCCATCACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTGCTACTAGTAGTGGAAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGTCCTCGGGTTCGGCAGCACATGTGACGACAGCTGCTTCTTCTTCTCTTCATCAGCGCTTGAGGTTGCCACTGCCACATGAAGACCCACTTTCGTCGTCGTCAGCGAGGTTTGGGGATCACAAAGGGGGCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGGCAGTGA

Predicted protein sequences of Glyma19g45090

Limit To All Plant Sequences

>Glyma19g45090.1   sequence type=predicted peptide   gene model=Glyma19g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELMQQVKGNYSDSREEEEAAAEIITITREPESSRLHQQDAASNFGKKLDLMDLSLGSSKEEEEGKLQQGGGGGGVVHHAHEIVEKENMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWRKRSAHPHAHHHAPDPLFLPSIRWYSLPPTMPPRYHHDHHFHHHLNYNNLFTFQQHQYQLGAATAAATAAHHGDQNSGSGSLYYLRSSMSMGGGDQNLQGRGNNIVPMIIDSVPVSVGHHNNRHGNGGITSGGATSSGKRLRLFGVNMECASSAEDSKGLSSGSAAHVTTAASSSLHQRLRLPLPHEDPLSSSSARFGDHKGGSTGTSLLFDLDPSLQYHRQ*

>Glyma19g45090.2   sequence type=predicted peptide   gene model=Glyma19g45090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELMQQVKGNYSDSREEEEAAAEIITITREPESSRLHQQDAASNFGKKLDLMDLSLGSSKEEEEGKLQQGGGGGGVVHHAHEIVEKENMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWRKRSAHPHAHHHAPDPLFLPSIRWYSLPPTMPPRYHHDHHFHHHLNYNNLFTFQQHQYQLGAATAAATAAHHGDQNSGSGSLYYLRSSMSMGGGDQNLQGRGNNIVPMIIDSVPVSVGHHNNRHGNGGITSGGATSSGKRLRLFGVNMECASSAEDSKGLSSGSAAHVTTAASSSLHQRLRLPLPHEDPLSSSSARFGDHKGGSTGTSLLFDLDPSLQYHRQ*

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