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Report for Sequence Feature Glyma19g45040

Feature Type:gene_model
Chromosome:Gm19
Start:50294981
stop:50298490
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g45040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46850AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:19251083-19253313 FORWARD LENGTH=633 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF730Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9RMV6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMV6_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EE8EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE8E related cluster n=1 Tax=unknown RepID=UPI000233EE8E SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g45040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g45040
ParalogEvidenceComments
Glyma03g42270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g45040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g261000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g45040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g45040
>Glyma19g45040.1   sequence type=CDS   gene model=Glyma19g45040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATATACTACTCCATTTTGGTCTATTTATTACTTCTTCACTTGACTCACTCCCTCTTCTTCCTTAGATACAATACAATGTCACCTATCATTGTCCTCCTCTCTTTTCTTCTTCTTCTTCTGTGCTTCCCTTTTTCTTGTTCCCTCCAACACCATCAATCCCCTTTCCTTCCAAACTCCTGCAATAATGTAACATGCGGGGACCTCCATGTTCCCTTTCCTTTCCATGTCAACACTTCATGTGACTCAATTTCCAGCGCCTTCCATCTCTCGTGCTCAAATTCCTCTGCCCTTTTACTCAGAATTGGCCCAGTGAGCTACACAGTCTTGGAATTCTTCCCAGATGGTGTGCTGGTCGACTTTCCAGGCTCATCATCCTGTAGACAGTACTATGACTTGAACTCTTTTGGCAGAAATTTTGCAGGGAAGGACTACTTTGGCTTGTCGGTTGATAATGTTATTGGGCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGCAGATTGTGAAACCATTGACTTGCCTGGTTGTGATGGAAAGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCTGACCATACCATATGGCATGTTGGAGATGGCTTTTCGGTGTTTTCTCAGTTTGGATGCAGAGGGGTTTCTAGTTGGGCTGTTCTGAGAGGCTCCACTTGGGGAAAACGAGGCGTCAAGTTGGAATGGGCACTTCCCAGGAACTCCTCTTCTGAAGTTTGTGCTACGAATGCTAACATTGCCAATTCTACAGCAGTTCAAGGAGGCGTCAGATGTGTCTGCCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGGCATGATCAGAGGAAATTTGTTATGATCGCCGGAATCATTGGCCCAGTTCTCATTGTTGCTTCCCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCAGGGATGTTTTACACAGAGCAGGCTTACTATCAAAACATTACAATCCCCAAAGCTTGTAAAACTCGATTATTCAGCTTCCATGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGGTCAGAAACTAATGCATGACAATAATGGGACAATTTTCGCTGGAGTTTTAGGGGATGAATCTCACATAGCTGTCGACAAGTTACAGTGCCAGAAGAATGACTTGATACAAGTCCTGTCACAAATCGAGGTTCTATCTTCTATTGTGCATAGAAACATGGCTCGCATTCTTGGATGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTATCCTTCCAATGGTACCTTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTGTTCTTGCATTCTTACACTACGAGAACAATCCTCCCATACTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGACTATTCTGTCAAGATTGCAGGATTTGGTCTGATCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACTATGAAGCATTTGACATCTGCAAAAATGATGTTTACGATATGGGTGTGTTGCTTCTTGAGATTATCTCAGGCTCAAATCAGTTGGATTCACCAACTTTGGCTTTACAGCATGTAAGGGCTGGAAAATTTGAAGAAATTTTGGACCCATTTCTTTGCTATGATGAACAACCACATTACCGCCAAGAGCAAATGCAAATAATTGCAGATCTAGCTACAAGGTGCCTGTTATTTGGGGTAGATGGAAGGCTAGGAATGATAGATGTTGTGAGGGAGTTAGTACACATGACTAAAGAAAGTCTTGATGGAGGAATTATGAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAGTGTCCCTTGA
Predicted protein sequences of Glyma19g45040
>Glyma19g45040.1   sequence type=predicted peptide   gene model=Glyma19g45040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIYYSILVYLLLLHLTHSLFFLRYNTMSPIIVLLSFLLLLLCFPFSCSLQHHQSPFLPNSCNNVTCGDLHVPFPFHVNTSCDSISSAFHLSCSNSSALLLRIGPVSYTVLEFFPDGVLVDFPGSSSCRQYYDLNSFGRNFAGKDYFGLSVDNVIGLYDCEDSSLCKADCETIDLPGCDGKGGGSLACCYPLSDHTIWHVGDGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSSEVCATNANIANSTAVQGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCYIKRHDQRKFVMIAGIIGPVLIVASLVALFYLLKRPTKPGMFYTEQAYYQNITIPKACKTRLFSFHELEEATKGFEEGQKLMHDNNGTIFAGVLGDESHIAVDKLQCQKNDLIQVLSQIEVLSSIVHRNMARILGCCIESGNTLVVYEYPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASVLAFLHYENNPPILHHNLKSACIFLDDDYSVKIAGFGLINSNFYYGSHLHKNYEAFDICKNDVYDMGVLLLEIISGSNQLDSPTLALQHVRAGKFEEILDPFLCYDEQPHYRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHMTKESLDGGIMKGPALEETFSNSSLLQMISMSPDSMSVP*






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