Glyma19g45015 - SoyBase

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Report for Sequence Feature Glyma19g45015

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50271404
stop:	50273250
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g45015

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10500	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr4:6491089-6492342 FORWARD LENGTH=349	SoyBase	E_val: 5.00E-45	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0019748	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
UniRef100_B9RMV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase, putative n=1 Tax=Ricinus communis RepID=B9RMV2_RICCO	SoyBase	E_val: 4.00E-46	ISS
UniRef100_UPI000233EE8D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE8D related cluster n=1 Tax=unknown RepID=UPI000233EE8D	SoyBase	E_val: 4.00E-73	ISS

Expression Patterns of Glyma19g45015

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g45015 not represented in the dataset	Glyma19g45015 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g45015 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g45015

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g45015

Limit To All Plant Sequences

>Glyma19g45015.1   sequence type=CDS   gene model=Glyma19g45015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCAGAGGGTGTGATTGAAAAGATGATGAAGGTGTCAAGGGAGTTTTTCGGTTTACCAGAGAGTGAGAGATTAAAGAGTTACTCCAACGATCCATTCAAGGCAAGCAGGAGGGACTTCTTGAGACTTCACTGTCACCCTATCGAAGATTACATAAAGGAATGGCCCTCCAACCCTCCATCTTTCAGAGAAGATGTTGCAGAATACAGCATGAAGATGAGAGAATTAGCGTTGAAATTGGTGGAGGCAATTTCTGAAAGCTTAGGTGAGAAGGCAGTTGGGAAGCATGGACAGCACATGGCAATGAACTACTACCCTCCGTGTCCAGAGCCAGAGCTGAGACGTCATCACCATACTCCTTCAAGATGA

Predicted protein sequences of Glyma19g45015

Limit To All Plant Sequences

>Glyma19g45015.1   sequence type=predicted peptide   gene model=Glyma19g45015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPEGVIEKMMKVSREFFGLPESERLKSYSNDPFKASRRDFLRLHCHPIEDYIKEWPSNPPSFREDVAEYSMKMRELALKLVEAISESLGEKAVGKHGQHMAMNYYPPCPEPELRRHHHTPSR*

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