Glyma19g44990 - SoyBase

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Report for Sequence Feature Glyma19g44990

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50260291
stop:	50261900
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46820	AT	Annotation by Michelle Graham. TAIR10: photosystem I P subunit \| chr2:19243729-19244870 FORWARD LENGTH=174	SoyBase	E_val: 3.00E-32	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009508	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0030093	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem I	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
UniRef100_I1NCR6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCR6_SOYBN	SoyBase	E_val: 2.00E-142	ISS
UniRef100_Q2HTB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid membrane phosphoprotein 14 kDa n=1 Tax=Medicago truncatula RepID=Q2HTB6_MEDTR	SoyBase	E_val: 4.00E-47	ISS

Expression Patterns of Glyma19g44990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44990

Paralog	Evidence	Comments
Glyma03g42240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g260600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g44990

Limit To All Plant Sequences

>Glyma19g44990.2   sequence type=transcript   gene model=Glyma19g44990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAGCCCTTTGTAAGAAATACCATAAAAGCCCTATCTTCCAGCCATGTCATCACACTATCCAGAAATGAGTGGTTCAGCACATGAAAAATTACAAAACATAAATCAATATCCTTTCCCTGGGGGCCTCAGAATCCTTAACACGAGTGAAAGTACAAGTTGCAGGGATGGCCTCAACCTCCTCCTCCACACTCTCTATATCCTCTTCATCCACCCTTGTTGATGCCAAGGCTCCAAGTCCAAGACAATCCCCACAATGTGTCTCCCCTCCACCTGTTCACTCTCCTTGGAAGACCACTGCTTTCTGTCGCAGGATTGCAAGCAATGTTATGGCAATGGCTACCACCAGAGAGGCACCCGCAGCAGAAGTTGCCACGACCGAGCTCTCTGTTGCCGAGACGCCAGAGATTGTGAAGACTATTCAAGAAGCTTGGGACAAAGTTGAAGACAAATATGCAGTGAGTTCACTTGCCGTAGCCGGTGTGGTTGCATTGGTTGGCTCAGCTGGCATGATCTCAGCAATTGATAGGCTTCCTTTAATTCCTGGGGTTCTTGAGGTCGTAGGCATTGGCTACAGTGGGTGGTTTGCTTACAAGAACCTATTTTTCAAGCCTGACAGGGAAGCTTTTCTACGAAAGGTAAAGGAAACATATAGCGAAATACTTGGAAGCAGCTAAAACAGTGAGGAATTGCTGCTTAGATTCTGTTCACACAAAAGAGATCTCTGTCTTGCAGCATTTTGTTAAAGATGCAAACCTCGCTTCATTTTGTCGCAATAAGCTTCCTGACCATACTTTATCCCATGTGATGTAATCTAGCCTGATAATAAATGTAACTCTTTTAATAATCAATCTACTTCAAGAAGATTTCATTTCTTCAATTATCCCTTTGTGGTTTCAAAGTTAAGAAAAAACATCTAATGCATGGATGACTTCATGAATTTGAAGGAAACCTTATCATTGTATATATTAATCTATTTCATTTC

Coding sequences of Glyma19g44990

Limit To All Plant Sequences

>Glyma19g44990.1   sequence type=CDS   gene model=Glyma19g44990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACCTCCTCCTCCACACTCTCTATATCCTCTTCATCCACCCTTGTTGATGCCAAGGCTCCAAGTCCAAGACAATCCCCACAATGTGTCTCCCCTCCACCTGTTCACTCTCCTTGGAAGACCACTGCTTTCTGTCGCAGGATTGCAAGCAATGTTATGGCAATGGCTACCACCAGAGAGGCACCCGCAGCAGAAGTTGCCACGACCGAGCTCTCTGTTGCCGAGACGCCAGAGATTGTGAAGACTATTCAAGAAGCTTGGGACAAAGTTGAAGACAAATATGCAGTGAGTTCACTTGCCGTAGCCGGTGTGGTTGCATTGGTTGGCTCAGCTGGCATGATCTCAGCAATTGATAGGCTTCCTTTAATTCCTGGGGTTCTTGAGGTCGTAGGCATTGGCTACAGTGGGGTAAGTTCATTAAATTTTACTGTTGCCATCAGCTGCATGAGATTGTTGGATAAAAGTGTTTTCCCTTATTTAATTTGCTTGTTGCATATTATTTTATATTTTAACTCTCGTATGATAGTATATATATTTACATTATTAAATTATCAGAGTAAGGCAGAACTGCTTCCAAGGAAAATGAACAATAGTAGTTAA

>Glyma19g44990.2   sequence type=CDS   gene model=Glyma19g44990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACCTCCTCCTCCACACTCTCTATATCCTCTTCATCCACCCTTGTTGATGCCAAGGCTCCAAGTCCAAGACAATCCCCACAATGTGTCTCCCCTCCACCTGTTCACTCTCCTTGGAAGACCACTGCTTTCTGTCGCAGGATTGCAAGCAATGTTATGGCAATGGCTACCACCAGAGAGGCACCCGCAGCAGAAGTTGCCACGACCGAGCTCTCTGTTGCCGAGACGCCAGAGATTGTGAAGACTATTCAAGAAGCTTGGGACAAAGTTGAAGACAAATATGCAGTGAGTTCACTTGCCGTAGCCGGTGTGGTTGCATTGGTTGGCTCAGCTGGCATGATCTCAGCAATTGATAGGCTTCCTTTAATTCCTGGGGTTCTTGAGGTCGTAGGCATTGGCTACAGTGGGTGGTTTGCTTACAAGAACCTATTTTTCAAGCCTGACAGGGAAGCTTTTCTACGAAAGGTAAAGGAAACATATAGCGAAATACTTGGAAGCAGCTAA

Predicted protein sequences of Glyma19g44990

Limit To All Plant Sequences

>Glyma19g44990.1   sequence type=predicted peptide   gene model=Glyma19g44990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSSSTLSISSSSTLVDAKAPSPRQSPQCVSPPPVHSPWKTTAFCRRIASNVMAMATTREAPAAEVATTELSVAETPEIVKTIQEAWDKVEDKYAVSSLAVAGVVALVGSAGMISAIDRLPLIPGVLEVVGIGYSGVSSLNFTVAISCMRLLDKSVFPYLICLLHIILYFNSRMIVYIFTLLNYQSKAELLPRKMNNSS*

>Glyma19g44990.2   sequence type=predicted peptide   gene model=Glyma19g44990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSSSTLSISSSSTLVDAKAPSPRQSPQCVSPPPVHSPWKTTAFCRRIASNVMAMATTREAPAAEVATTELSVAETPEIVKTIQEAWDKVEDKYAVSSLAVAGVVALVGSAGMISAIDRLPLIPGVLEVVGIGYSGWFAYKNLFFKPDREAFLRKVKETYSEILGSS*

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