Report for Sequence Feature Glyma19g44960
Feature Type: gene_model
Chromosome: Gm19
Start: 50241388
stop: 50242572
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g44960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G01400 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants
SoyBase E_val: 3.00E-153 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_I1JS42 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS42_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HTC1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HTC1_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g44960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g44960
Paralog Evidence Comments
Glyma03g42211 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g44960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g260300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g44960
Coding sequences of Glyma19g44960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g44960.2 sequence type=CDS gene model=Glyma19g44960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGAAGCAAGAAGAAGCTTCCGAATCAGACCCTGTTCTGGCCAAAGAAATCTTGGACTTACTCCAGCTACCTCATCCTCCTTCTCAAGTTGGGTCGCTCCAAACACTTCACTTTCCTCGACGGTCTCCTCCGTCCCCTCAAGTCCGATTCTCACCCCATCACTCCCACCCTCTTCACTTACCTATTCAAAGTCTACCCCGAAGCCGATTTGCCCGACAAAGCCCTCAAAACCTTCTACACCATTCTCCACTTTAATTGCAAGCCTCTCCCCAAACACCTTAACCGCATTCTCGAGGTTCTCGTCTCCCACCGCAACTACCTTCGTCCCGCCTTCGATCTCTTCAAGGACTCTCGCAGCTACGGCGTGGAGCCCGACACCAAGTCCTGCAACATTCTCATGCGCCCCTTCTGTCTCAACGGGGACATTAGCATTGCCTACTCTCTGTTCAACATAATGTTTAAACGAGATGTTGTTCCGGATATCGAGTCTTACCGGATTTTGATGCAGGCCTTGTGTAGGAAGAGTCGGGTGAATGGAGCTGTTGATCTTTTGGAGGATATGTTGAACGGGTTTGTTCCGGATTCTTTGACTTACACCACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGTTCAGGGAAGCTTACAAGCTTCTTTGTAGGATGAAGAATACTGTTATATTGGGCTTCTGTAGAGATGGGCGTACTCATGATGCTTGCAAGGTTATTTCTGACATGCGGGCCAATGGGAGTTTGCCCAATCTCGTGTCTTATCGTACTTTGGTGAGTGGTTTGTGTAACATGGGAATGCTTGATGAGGCTAGTAAGTATATGGAGGAAATGCTGTCCAAAGATTTTTCTCCTCATTTTGCTGTTGTTCATGCCTTGGTGAAGGGGTTTTGTAATGTTGGTAGGACAGAGGATGCTTGTGGAGTTCTCACCAAGGCACTAGAGCATGGGGAGGCTCCTCATGTGGATACTTGGATGATCATAATGCCTGTAATATGTGAAGTGGATGATGAGGGGAAAAGCAGTGGTGCTTTGGAGGAAGTTCTCAAGATTGAAATAAAAGGGCATACTAGAATTGTGGATGCTGGCATTGGTTTGGAGAACTACTTGATTGGGAAGATACGATCCAGGTCAAGAGCATGCTAA
Predicted protein sequences of Glyma19g44960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g44960.2 sequence type=predicted peptide gene model=Glyma19g44960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
RSKKKLPNQTLFWPKKSWTYSSYLILLLKLGRSKHFTFLDGLLRPLKSDSHPITPTLFTYLFKVYPEADLPDKALKTFYTILHFNCKPLPKHLNRILEVLVSHRNYLRPAFDLFKDSRSYGVEPDTKSCNILMRPFCLNGDISIAYSLFNIMFKRDVVPDIESYRILMQALCRKSRVNGAVDLLEDMLNGFVPDSLTYTTLLNSLCRKKKFREAYKLLCRMKNTVILGFCRDGRTHDACKVISDMRANGSLPNLVSYRTLVSGLCNMGMLDEASKYMEEMLSKDFSPHFAVVHALVKGFCNVGRTEDACGVLTKALEHGEAPHVDTWMIIMPVICEVDDEGKSSGALEEVLKIEIKGHTRIVDAGIGLENYLIGKIRSRSRAC*