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Report for Sequence Feature Glyma19g44960

Feature Type:gene_model
Chromosome:Gm19
Start:50241388
stop:50242572
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01400AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants SoyBaseE_val: 3.00E-153ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_I1JS42UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS42_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HTC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HTC1_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g42211 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g260300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g44960.2   sequence type=CDS   gene model=Glyma19g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGCAAGAAGAAGCTTCCGAATCAGACCCTGTTCTGGCCAAAGAAATCTTGGACTTACTCCAGCTACCTCATCCTCCTTCTCAAGTTGGGTCGCTCCAAACACTTCACTTTCCTCGACGGTCTCCTCCGTCCCCTCAAGTCCGATTCTCACCCCATCACTCCCACCCTCTTCACTTACCTATTCAAAGTCTACCCCGAAGCCGATTTGCCCGACAAAGCCCTCAAAACCTTCTACACCATTCTCCACTTTAATTGCAAGCCTCTCCCCAAACACCTTAACCGCATTCTCGAGGTTCTCGTCTCCCACCGCAACTACCTTCGTCCCGCCTTCGATCTCTTCAAGGACTCTCGCAGCTACGGCGTGGAGCCCGACACCAAGTCCTGCAACATTCTCATGCGCCCCTTCTGTCTCAACGGGGACATTAGCATTGCCTACTCTCTGTTCAACATAATGTTTAAACGAGATGTTGTTCCGGATATCGAGTCTTACCGGATTTTGATGCAGGCCTTGTGTAGGAAGAGTCGGGTGAATGGAGCTGTTGATCTTTTGGAGGATATGTTGAACGGGTTTGTTCCGGATTCTTTGACTTACACCACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGTTCAGGGAAGCTTACAAGCTTCTTTGTAGGATGAAGAATACTGTTATATTGGGCTTCTGTAGAGATGGGCGTACTCATGATGCTTGCAAGGTTATTTCTGACATGCGGGCCAATGGGAGTTTGCCCAATCTCGTGTCTTATCGTACTTTGGTGAGTGGTTTGTGTAACATGGGAATGCTTGATGAGGCTAGTAAGTATATGGAGGAAATGCTGTCCAAAGATTTTTCTCCTCATTTTGCTGTTGTTCATGCCTTGGTGAAGGGGTTTTGTAATGTTGGTAGGACAGAGGATGCTTGTGGAGTTCTCACCAAGGCACTAGAGCATGGGGAGGCTCCTCATGTGGATACTTGGATGATCATAATGCCTGTAATATGTGAAGTGGATGATGAGGGGAAAAGCAGTGGTGCTTTGGAGGAAGTTCTCAAGATTGAAATAAAAGGGCATACTAGAATTGTGGATGCTGGCATTGGTTTGGAGAACTACTTGATTGGGAAGATACGATCCAGGTCAAGAGCATGCTAA

>Glyma19g44960.2   sequence type=predicted peptide   gene model=Glyma19g44960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RSKKKLPNQTLFWPKKSWTYSSYLILLLKLGRSKHFTFLDGLLRPLKSDSHPITPTLFTYLFKVYPEADLPDKALKTFYTILHFNCKPLPKHLNRILEVLVSHRNYLRPAFDLFKDSRSYGVEPDTKSCNILMRPFCLNGDISIAYSLFNIMFKRDVVPDIESYRILMQALCRKSRVNGAVDLLEDMLNGFVPDSLTYTTLLNSLCRKKKFREAYKLLCRMKNTVILGFCRDGRTHDACKVISDMRANGSLPNLVSYRTLVSGLCNMGMLDEASKYMEEMLSKDFSPHFAVVHALVKGFCNVGRTEDACGVLTKALEHGEAPHVDTWMIIMPVICEVDDEGKSSGALEEVLKIEIKGHTRIVDAGIGLENYLIGKIRSRSRAC*







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