Glyma19g44950 - SoyBase

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Report for Sequence Feature Glyma19g44950

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50238607
stop:	50240349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01080	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:45503-46789 REVERSE LENGTH=294	SoyBase	E_val: 2.00E-68	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
KOG4206	KOG	Spliceosomal protein snRNP-U1A/U2B	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF56	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9RNK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO	SoyBase	E_val: 3.00E-67	ISS
UniRef100_I1NCR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g44950 not represented in the dataset	Glyma19g44950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g44950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g260200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g44950

Limit To All Plant Sequences

>Glyma19g44950.2   sequence type=transcript   gene model=Glyma19g44950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCATATAAATGGAATTATTTTATTTGAAGAAAGAAAAGAAAGATAAAGTTGAATGGATAGATTGAGTTGTAACCTGTAGCTAGCAGCCTCATTACTCTTTAAGGGGAAACATGGCATTGGCAGCTAATGCTACTCCCTCTCTGGCCTTCGCTTCTTCCTCCTTACTGAACCACAATCCCCAATTTGGTGCTGCTCCCAAACGATTCGTTTCTTCTTCTTCTTCTTCTTTGTGCCTTGCCGCGGGGCTCAGCTCCAAGGCTAGGGCCTTCAGTTTCTCTGCCTCGGCTGCGGCCCTTGACGGAGAAGAACTCGCGGTGGAAGAAACGTGGAAGCTAGCGAGACCAACCGAAGTGTACGTCTGCAACCTTCCACGAAGCTGTGACACGGAGCAACTACTTCATATGTTCAACCCTCACGGAACCGTTCTCTCTGCCCAGGTTTGCCGGAGTGCGGAAACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCTTCTATTAACTCGGCAAGAAAAGCAATTGCGGCATTGGATGCATCGGATTTTGGTGGGCGTGAAGTGCGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGAAGGAATCTTGAAACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGCAATCTTTCCAGGAGTGCGGGGCCTCAAGACTTGAAACAACTTTTTGGTAGATTTGGTATTGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGTCAGAACGTGATGCAGCAATGTCGCTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTGATTAGAGAGGGTGTAGAGAGAGAGGACTGAGACCTAACTGGATATTCATATTTTCCATAGAGATTGTTGCAATTTTGATTGTTTTGGGAGGATGCTCTCTGTTCTGGCTTTTGGGGGGCTTATAGGCTCCTTTGACCAAACTAAGCTTGATGCAAGAACATTCCTGAGCTAGAAAATGTCAGCAAGCAGAGTTGACCTACTTTGAAAAGTCCATTAAAATTGCAATCAGCAATGTCTCTGTATATTTGAAATTTGAAACATGCTTTTCTGAGTGACAAAGTATTCAACTTAAGGTCAAGAACAAAGACTGCCAGACCTGATAAGGAACTTCTCTTCCATTGTTTTTACATATCTATAAATATTTAAATCTACTGTTGACAAGAAAAAAGTAATGTGAGAAAGATTATTGAGCCAACTTTTTACCACTGTTGTTAAGTTTTCAAACTAATTCATTGTCTTATGTTGTTTTTGACGGCGTGGCTTGGAGAACCTGCCTTTTTTTTTTCAAGCATGTCTGCATGTTTTTCTGACTCTAATCTTCAGCAAGATAATTTAGGGTTGTCTGTTTTATAATTATGTAAGATTAACTTTGAACTATTGTACTTACAAATTAC

Coding sequences of Glyma19g44950

Limit To All Plant Sequences

>Glyma19g44950.1   sequence type=CDS   gene model=Glyma19g44950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGCAGCTAATGCTACTCCCTCTCTGGCCTTCGCTTCTTCCTCCTTACTGAACCACAATCCCCAATTTGGTGCTGCTCCCAAACGATTCGTTTCTTCTTCTTCTTCTTCTTTGTGCCTTGCCGCGGGGCTCAGCTCCAAGGCTAGGGCCTTCAGTTTCTCTGCCTCGGCTGCGGCCCTTGACGGAGAAGAACTCGCGGTGGAAGAAACGTGGAAGCTAGCGAGACCAACCGAAGTGTACGTCTGCAACCTTCCACGAAGCTGTGACACGGAGCAACTACTTCATATGTTCAACCCTCACGGAACCGTTCTCTCTGCCCAGGTTTATTGCTTATTTAACATCCTACTATCTTCTGTTTTCTTGTTCTTTTGTTTATCCCTCGTGATTTCTCTTTTTCAGGTTTGCCGGAGTGCGGAAACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCTTCTATTAACTCGGCAAGAAAAGCAATTGCGGCATTGGATGCATCGGATTTTGGTGGGCGTGAAGTGCGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGAAGGAATCTTGAAACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGCAATCTTTCCAGGAGTGCGGGGCCTCAAGACTTGAAACAACTTTTTGGTAGATTTGGTATTGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGTCAGAACGTGATGCAGCAATGTCGCTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTGATTAGAGAGGGTGTAGAGAGAGAGGACTGA

>Glyma19g44950.2   sequence type=CDS   gene model=Glyma19g44950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGCAGCTAATGCTACTCCCTCTCTGGCCTTCGCTTCTTCCTCCTTACTGAACCACAATCCCCAATTTGGTGCTGCTCCCAAACGATTCGTTTCTTCTTCTTCTTCTTCTTTGTGCCTTGCCGCGGGGCTCAGCTCCAAGGCTAGGGCCTTCAGTTTCTCTGCCTCGGCTGCGGCCCTTGACGGAGAAGAACTCGCGGTGGAAGAAACGTGGAAGCTAGCGAGACCAACCGAAGTGTACGTCTGCAACCTTCCACGAAGCTGTGACACGGAGCAACTACTTCATATGTTCAACCCTCACGGAACCGTTCTCTCTGCCCAGGTTTGCCGGAGTGCGGAAACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCTTCTATTAACTCGGCAAGAAAAGCAATTGCGGCATTGGATGCATCGGATTTTGGTGGGCGTGAAGTGCGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGAAGGAATCTTGAAACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGCAATCTTTCCAGGAGTGCGGGGCCTCAAGACTTGAAACAACTTTTTGGTAGATTTGGTATTGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGTCAGAACGTGATGCAGCAATGTCGCTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTGATTAGAGAGGGTGTAGAGAGAGAGGACTGA

Predicted protein sequences of Glyma19g44950

Limit To All Plant Sequences

>Glyma19g44950.1   sequence type=predicted peptide   gene model=Glyma19g44950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAANATPSLAFASSSLLNHNPQFGAAPKRFVSSSSSSLCLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLVISLFQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED*

>Glyma19g44950.2   sequence type=predicted peptide   gene model=Glyma19g44950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAANATPSLAFASSSLLNHNPQFGAAPKRFVSSSSSSLCLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED*

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