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Report for Sequence Feature Glyma19g44860

Feature Type:gene_model
Chromosome:Gm19
Start:50167195
stop:50174285
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g44860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00830AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495 SoyBaseE_val: 0ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG0117 KOG Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) JGI ISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF199Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_G7L537UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7L537_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NCQ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCQ2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g44860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44860
ParalogEvidenceComments
Glyma03g42150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g259200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g44860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g44860
>Glyma19g44860.1   sequence type=CDS   gene model=Glyma19g44860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGACGATGATGGAGTGGATGGAGTTGAAGAAGAAAATGCTGAAGGTAGTTTTGAAGAAGATGAATATGAGGACTCAGCTGCTGAGGCTGGTGGGAAAGACCAGTTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGATGATGAGCAAAAATTGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCCATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCGCAAAAGGCTATTGAGGAGATACACAGCAAGGAATTTAAGGGGAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACTGAAGATGATTTTAGGAAAGTTGTTGAAGGTGTTGGTCCTGGGGTTGAAACCATTGAGCTCATAAAGGACCCTCAAAATCCTAGTAGGAACCGTGGGTTTGCGTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGGCAAGTTCTAGCTTTAAGCTGGATGGCAACACCCCGACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATTCCCGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAATGCTTGAAGTTGTTCTTGCTAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATATTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTTCTTCAACAACCTGGTGTACAAGTGCCAGCAACCCGACCCCGCAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG
Predicted protein sequences of Glyma19g44860
>Glyma19g44860.1   sequence type=predicted peptide   gene model=Glyma19g44860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPATRPRRIDRSNGPSGQPGRGGGGGSGNDEGNRSRRYRPY*






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