Glyma19g44820 - SoyBase

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Report for Sequence Feature Glyma19g44820

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50148975
stop:	50152950
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46710	AT	Annotation by Michelle Graham. TAIR10: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain \| chr2:19192105-19194656 FORWARD LENGTH=455	SoyBase	E_val: 2.00E-163	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009531	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: secondary cell wall	SoyBase	N/A	ISS
PTHR23177	Panther	MKIAA1688 PROTEIN	JGI		ISS
PTHR23177:SF2	Panther	GTPASE ACTIVATING PROTEIN	JGI		ISS
PF00620	PFAM	RhoGAP domain	JGI		ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_I1NCP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCP9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82459	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rac GTPase activating protein 2 (Fragment) n=1 Tax=Lotus japonicus RepID=O82459_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44820

Paralog	Evidence	Comments
Glyma03g42090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g258900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g44820

Limit To All Plant Sequences

>Glyma19g44820.1   sequence type=CDS   gene model=Glyma19g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCGGCTATTTCGATCCAAATCTTGCGGACTGGTGGAGTTCAACGCTGCTCCGCCGAGTCCACTTTTCCATGATGTGAAAAGTGAGGACGAAGACAATGAAGAAGATGAAGATGAAGATGAAGAAGAGGAAGAAGAAGAAGAATTGGACAGTGATGATGATGTTTCGAGCAACCCGGTTTCAACGGCGTTGATGAATCCAGGGTCAAAAGTGGAGAACAAAGGTTGGCGTGGTGGGCATGGTTGCCAATCTAACCAGTTTGCGATGTTGGATATTTTGTTGGCTGCGTTGAAGAAGTCGCTGGTGACTTGCAGTGTGGAGAGAGAGGATATTTCTTCGTTGGATATTAGCTGGCCCACAGAGGTGCGCCATGTCTCGCATGTTACCTTTGATAGGTTCAATGGCTTTCTCGGTTTGCCCTCTGAGCTCGAGCTTGAGGTTCCCAAGAGAGTCCCCAGTGCCAGTGCTAAGGTATTTGGAGTTTCTGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACGATTCTGCTGATGATGCAAAAGCGATTGTATTCAGAGGGTGGCCTTAAAGCGGAAGGAATATTCCGAATTAATGCTGATAATAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATCGACGTTCATTGTTTATCTGGTTTAATAAAGGCTTGGTTTAGAGAGCTTCCAACGGGGGTACTTGATTCCCTCACCCCCGAACAGGTGATGCATTGCAACACAGAAGAGGATTGCACCAATCTTATGAAGTTGCTTCCTTCAACTGAAGCTGCATTGCTTGACTGGGCAATCAATTTGATGGCAGATGTTGTTGAGCGTGAACAGTTCAACAAAATGAATGCTCGCAATGTTGCCATGGTTTTTGCGCCCAACATGACACAGATGGCGGACCCTTTGACTGCATTGATTCATGCAGTGCAAGTCATGAACTTCCTCAAGACATTGATTCTGAAGACCCTTCGAGAAAGAGATGAATCAATTGCCAAGGCAAGACAGCTGTCATCACTCTTAGATTCTCCCTCTTGCAAAGGTGATTCCCATCCTTTGGAAGTTAATAACAAGGAGGAATCTTGTGAAGAGGAAACTGAAGAGACCTGTAGCACAAAGCCACCTGTGAAAAGCAAGTTCTCAAGGACTTCTACCTTGGGAAGAATAGAATGGTGTATTGAAGAGAAACTTTGGAGATCTGAGGAAAAGGGAAATGGAGTTGGGGAATTGGAATCTGTTTCGGATAGTAGCTCACCTTCAAGGTATGAGAATGGTCCATTAGAGAATAGGTATAGAGGTATATATGACAGTGAACATTGGGTGAAATTGAGAAATGGAGTGCGCAGGCTGTGCAGACACCCTGTATTTCAATTGAGCAAGCCCACTAAGAAGCGTGCAAGTCTTGGTATTGTAAATACTAGGGAAGGAGGTGGAGAGGCTTGGGCCTAA

Predicted protein sequences of Glyma19g44820

Limit To All Plant Sequences

>Glyma19g44820.1   sequence type=predicted peptide   gene model=Glyma19g44820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRLFRSKSCGLVEFNAAPPSPLFHDVKSEDEDNEEDEDEDEEEEEEEELDSDDDVSSNPVSTALMNPGSKVENKGWRGGHGCQSNQFAMLDILLAALKKSLVTCSVEREDISSLDISWPTEVRHVSHVTFDRFNGFLGLPSELELEVPKRVPSASAKVFGVSAKSMQCSYDERGNSVPTILLMMQKRLYSEGGLKAEGIFRINADNSQEEFVRDQLNRGLVPLGIDVHCLSGLIKAWFRELPTGVLDSLTPEQVMHCNTEEDCTNLMKLLPSTEAALLDWAINLMADVVEREQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLRERDESIAKARQLSSLLDSPSCKGDSHPLEVNNKEESCEEETEETCSTKPPVKSKFSRTSTLGRIEWCIEEKLWRSEEKGNGVGELESVSDSSSPSRYENGPLENRYRGIYDSEHWVKLRNGVRRLCRHPVFQLSKPTKKRASLGIVNTREGGGEAWA*

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