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Report for Sequence Feature Glyma19g44760

Feature Type:gene_model
Chromosome:Gm19
Start:50083357
stop:50089186
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g44760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61870AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr3:22902702-22903895 FORWARD LENGTH=272 SoyBaseE_val: 4.00E-117ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9M277UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g61870/F21F14_40 n=1 Tax=Arabidopsis thaliana RepID=Q9M277_ARATH SoyBaseE_val: 2.00E-114ISS
UniRef100_UPI000233EEBCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EEBC related cluster n=1 Tax=unknown RepID=UPI000233EEBC SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g44760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44760
ParalogEvidenceComments
Glyma03g42050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g258300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g44760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g44760
>Glyma19g44760.3   sequence type=transcript   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTATATCTAAAAAGTTATTGACATATAAAAGACTAATCACCTCAACACACCATAGAACATCAATTTTTTACTTCCAATCAAGTAGGATTTTCAGACCTAAACTCTTGTTTACTTAATAATACTCGTTTGAAGCAAAGACACAACTGGTAGGAGTAGCATCTTGGAACATAAAACATTTTGAATAGTTGAACTTTTTTGTTTTCTTTTATAACAAAGTGGTTAGAAGAAAGTGACACATTCAAAGCAAACCACAAAGAAAGCTGAGTGAAGGGAGAGTAACATCTTAGGCATAAGTTCCTTATCTTTTGCAGGGTAGAACCTCAACCGTGTCTTGCACTAAGCTACTCAATTTCTTCTCCTTCACTCTGCTGAGTGCTGCTGTCTCCCTCAAAGAACTCATGGCCGCCACACTCACTCTTCTAAAGCTTCCAATTCTTCCTAACAAGCCATTACTGCCACGCCCATCAACCTCAAAACTTGTTCCATTTCCTTCCATCTATTCAAAGTTAAATATCCCAAAAGATTCTAACCCACAAAATTTACCCTTCTTAGATCAAAACATCGATGCTCTCAAGCCTGTCTTTCTTTCCCTCTCAGCAATCTCTTTTCCATTGTTATTAGAAACCAAGGCAAGCAAGCATCTGCATCCTCCCTCGCATTCTTTCATTTGATTTTGTGATGGTGATGATGGGTGTTGTGTTATTGGCACAGGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGAATGTAAGATTCTAAATTGTAAGTTCCCTGCTATTTTACTTTCAATTTTGCCTTCTGGCAACACCAAATAACGCAATTTTTGAAATTTTCCATTCTCGTTTAGCATGTACCATGACAGAGTGCCAGACAAGCATTGTATAATTGCATTACACCATTCTTTAGTGTAAATTAGCATGTAAAGAACTTATTACATTCGCATTATTACGTAA

>Glyma19g44760.4   sequence type=transcript   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAAAGGATTAATGTTCTACCTTCAAGTAGGGTTTGATGGCATCTTCTCAGTTTATGTCCGAACTTTGAACTCCTTTATTCCTTAGGCACACCAATATTACAAATTGTAATATAAAATCCGAGAGTGTCAAATTGATTTTCACTTTCCACGCAGATAGGTAACTTTCATAGTAGGATTTGGGATTGACATTTGGCAGATAGCATCGGTTTGGTGCAGTGAGAAGTGAAAACCGACACAACTCTTTCATGCATGACGAAAATTAAGGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGAATGTAAGATTCTAAATTGTAAGTTCCCTGCTATTTTACTTTCAATTTTGCCTTCTGGCAACACCAAATAACGCAATTTTTGAAATTTTCCATTCTCGTTTAGCATGTACCATGACAGAGTGCCAGACAAGCATTGTATAATTGCATTACACCATTCTTTAGTGTAAATTAGCATGTAAAGAACTTATTACATTCGCATTATTACGTAA

>Glyma19g44760.5   sequence type=transcript   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTAAGGATACTAAAAAGTTTTGTGCTGCAGGAAGCAAAGGCCCAACCCGAGATACTCCCTCTCTCCATTAGGTTTGGATCACCCTTCACAGAAAAGGAAATTAGCATGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGAATGTAAGATTCTAAATTGTAAGTTCCCTGCTATTTTACTTTCAATTTTGCCTTCTGGCAACACCAAATAACGCAATTTTTGAAATTTTCCATTCTCGTTTAGCATGTACCATGACAGAGTGCCAGACAAGCATTGTATAATTGCATTACACCATTCTTTAGTGTAAATTAGCATGTAAAGAACTTATTACATTCGCATTATTACGTAA
Coding sequences of Glyma19g44760
>Glyma19g44760.2   sequence type=CDS   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCACACTCACTCTTCTAAAGCTTCCAATTCTTCCTAACAAGCCATTACTGCCACGCCCATCAACCTCAAAACTTGTTCCATTTCCTTCCATCTATTCAAAGTTAAATATCCCAAAAGATTCTAACCCACAAAATTTACCCTTCTTAGATCAAAACATCGATGCTCTCAAGCCTGTCTTTCTTTCCCTCTCAGCAATCTCTTTTCCATTGTTATTAGAAACCAAGGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGA

>Glyma19g44760.3   sequence type=CDS   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGATGGGTGTTGTGTTATTGGCACAGGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGA

>Glyma19g44760.4   sequence type=CDS   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAAAATTAAGGATGCTCTTGCTGTTGGAGGAGAGTTTGGGATATTGGAAGGAAGATCATTTGCTCTCATACACCCCATTGTGATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGA

>Glyma19g44760.5   sequence type=CDS   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTTTTTTCTTGTATACCTTGTGGGCAGGGTATTTGGGGTGGCAATGGCGGCGAGTTAGGACAATCCAGAATGATATTAATGAACTCAAGAAACAAGTCAAACCTAACCCAGTCACCCCAGATGGCAAACCAGTGGAAGAAGCAGCACCATCACCAGTTGAACTCCAAATACAGCAACTCACTGAGGAAAGAAAAGAGCTGATAAAAGGTTCCTATAAGGATAGACACTTCAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGTCAGTTGGTGGAGGAGTGAACACATGGTTTAGGACAGGAAAGCTTTTTCCCGGTCCACATTTATTTGCGGGAGCAGCTATTACTGCTTTATGGGCACTGGCTGCAGCCCTGGTACCATCAATGCAAAAAGGAAATGAAACAGCCAGAAATCTTCACATCGCGCTGAATGCAGTAAACGTTCTGCTCTTTGTGTGGCAGATTCCCACTGGAATTGACATTGTGTTCAAGGTGTTTGAGTTCACAACATGGCCTTGA
Predicted protein sequences of Glyma19g44760
>Glyma19g44760.2   sequence type=predicted peptide   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATLTLLKLPILPNKPLLPRPSTSKLVPFPSIYSKLNIPKDSNPQNLPFLDQNIDALKPVFLSLSAISFPLLLETKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQWRRVRTIQNDINELKKQVKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESVGGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP*

>Glyma19g44760.3   sequence type=predicted peptide   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMMGVVLLAQDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQWRRVRTIQNDINELKKQVKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESVGGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP*

>Glyma19g44760.4   sequence type=predicted peptide   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKIKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQWRRVRTIQNDINELKKQVKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESVGGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP*

>Glyma19g44760.5   sequence type=predicted peptide   gene model=Glyma19g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSFFLYTLWAGYLGWQWRRVRTIQNDINELKKQVKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESVGGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP*






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