SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01225 | AT | Annotation by Michelle Graham. TAIR10: NC domain-containing protein-related | chr1:96064-97242 FORWARD LENGTH=260 | SoyBase | E_val: 1.00E-135 | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR13943 | Panther | HRAS-LIKE SUPPRESSOR - RELATED | JGI | ISS | |
| PTHR13943:SF16 | Panther | NC DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF04970 | PFAM | NC domain | JGI | ISS | |
| UniRef100_C6TCT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCT1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q3EAE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NC domain-containing protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q3EAE0_ARATH | SoyBase | E_val: 3.00E-131 | ISS |
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Glyma19g44681 not represented in the dataset |
Glyma19g44681 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g41990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g257600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g44681.1 sequence type=CDS gene model=Glyma19g44681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTGCTTTCTAACAGAGTGGAGAGACATGAGATCAAGCCTGGCGATCACATCTACACATACAGAGCTGTTTTCACCTATTCTCATCATGGCATTTTTGTTGGGGGAAGCAAGGTTGTACATTTCAGACCTGAAAGAAACTTAAAGTCAATGACTGAGACATCATCAAACTGGGATGATCCAACATCAAACCCATGTCCAACCTTTCCTGATTGTGGATTCAGACAACCAAACAGTGGAGTAGTCCTTTCTTGCTTAGACTGCTTCCTTCGAAATGGGTCTCTTTACTGTTTTGAGTATGAGGTTTCACCATCTGTTTTCCTCAGCAGAATAAGGGGTGGCACATGCACTACTGCATCAGCTGACCCACCAGAGACTGTTATTCATCGAGCTATGTATCTTCTTCAAAACGGCTTTGGAAATTATAATGTTTTTCAGAACAATTGTGAGGATTTTGCCTTGTACTGCAAAACTGGTCTTTTGATACAAGACAAGCAAGGGGTTGGAAGAAGTGGCCAAGCTTCTTCTGTTATTGGTGCTCCATTGGCTGCAATGATCTCTTCTCCTCTCAAGTTGTTAATGCCAAGTCCTGTTGGTGTTGCTACTGTAACTGCAGGAATGTACTGCATGAGCAGATATGCAACTGATATTGGTGTCAGAAGTGATGTGATCAAGGTGCCAGTGGAAGACTTGGCTGTGAACCTTGGATGGATTTGTCAAGAGGAGGAGGAGGTAGCTGAACATGAAAATCCAGACAGACAGATTACCACCAGATGA
>Glyma19g44681.1 sequence type=predicted peptide gene model=Glyma19g44681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLLSNRVERHEIKPGDHIYTYRAVFTYSHHGIFVGGSKVVHFRPERNLKSMTETSSNWDDPTSNPCPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYEVSPSVFLSRIRGGTCTTASADPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIQDKQGVGRSGQASSVIGAPLAAMISSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVPVEDLAVNLGWICQEEEEVAEHENPDRQITTR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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