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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49250 | AT | Annotation by Michelle Graham. TAIR10: defective in meristem silencing 3 | chr3:18258613-18260803 REVERSE LENGTH=420 | SoyBase | E_val: 3.00E-106 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0016569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1NCM6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NCM6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94A79 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g49250/F2K15_110 n=1 Tax=Arabidopsis thaliana RepID=Q94A79_ARATH | SoyBase | E_val: 2.00E-103 | ISS |
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Glyma19g44560 not represented in the dataset |
Glyma19g44560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g256600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g44560.2 sequence type=transcript gene model=Glyma19g44560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGATAAGTGTGATTTAAAATAATAAAAAAGATGTAAAAGTGAATTCAAATAAAAAAATTGAATTAAAATTGAGTGTCAATTTTTTGGAAACTTGAATCTCACATAAAGAACCTTAGTAGTTCTGCATTTAACAATTGAAAAGAGCAAAGTTTGGAAATTTGGGAAACTTGAAAGCATAGCAGAGAGATCACATCGCGGCTCTCTCATGTCTCAACCCAACCACCCGCTGAATCTAAATGATGATAACAGAGAGAGATGTAAGAATACAATCAAACAGCATGAAGATAATCTTAAGTTTCTTAATTCTCAATCAAATCAATTAGCTGAATCAATATTTGACTTGCAAGGTAATGAAGAAAGAGAACTCTGCTGCTAGTATATTTAGTTGGCTAAAAGTTAATGCACAGACATCAAATTTGACATTAACAAAGGATGTTGTGGGAGTTGTTGCAACCCTTGCCAAAGTTGAGAGCGATGATCTTAGCAGGATTCTTTCTGAATTTTTGGGCTTGGAGACAATGCTTGCAATTGTGTGCAGTTCTTATGAAGGCATTAATGCACTGGAGAAGTATGATCCTGAAGGCTTGATAAACTGTAATGGTGGATTGCATGGTATAGGGTCTTCAATTGGAAAGAGAATAAATGGCCGATTTGTTGTCATATCTCTTGAAGATATAAGACCCTTTGTTGGAGGTTTTGTAGCCAATGATCCACAAAAGAAATTGGCTCTCCCAAAGCCAAGATTACCTAATGGGGAGTGCCCACCTGGGTTTCTTGATTATGCGGTGAACATGATCCATTTGGATTCAAAATATTTATCTTTTCTTACTGACAGTGGGTACGGTCTTAGAGAGACGCTGTTTTATGGACTTTTTTCTCGCCTACAAATATATAAAACCCGGAATGAAATGCTGCTTGCTCTCCCATGCATTCACGACGGAGCTTTGTCCTTGGATGGTGGGATGATTAGGGGACGTGGCATGTTTGCTCTTGGTAGTAGGAAAGATGTAGAAGTGAAGTTTCCTCTAATTTCGGGAGGATCTGATGTACCTCCAAACTATATTGAAACTGAAGAGGCAGTGAGGAAGCTGAATTGGGAAACCTCTAAACTTGCTGCAGATAAACACAGAGAGCAGCAATTATTGGATTATAGGAAAGGGAAACTTCACTAGGCAAGCCTGAAAAGTTATTTATGGAAAGTTACCTTGCAAGACATGGTAACAACTAACCACATCCAATTTGTGTGCATTAGCTGTTAATTTTGCAGAACATAGTTCATGAGGGATATGTCCCAAAGAAATTAGACAGGTGTGCATAAATAGACATCACATAGTGAACTTCTTGATGTAACTTAAGCAAGGAGCTATGCTTGCTTACTGTCCGTGTCTGTTGTTATGTCTGATTCTTAATTTCAATCAGGAGAAACCTTGGATAGTTAGCTTCTCCATTTGAATGATGCAACTTGCTGGGGAGGGGACTGCCACTTTCTTGAAAATGAACGTTTGTCACATGAGTACATCCAAATTCCTGTGATCTTCACTCTTGTCCTCCAATTCCAACTCGTTCTCTGATTAATAGAGATGCAACATGAGCCGCTTTCAGTTTCAATTGCTCGTGTGTAGGACCAAAAATTCTTTTTAAAATAAGATTCTAGTGAGGAAGTCACTAGACTTGCAGTTGCACAGCAAAATATCACAAAATGGTCCCTGAAAATAAAAGTACA
>Glyma19g44560.1 sequence type=CDS gene model=Glyma19g44560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCAACCCAACCACCCGCTGAATCTAAATGATGATAACAGAGAGAGATGTAAGAATACAATCAAACAGCATGAAGATAATCTTAAGTTTCTTAATTCTCAATCAAATCAATTAGCTGAATCAATATTTGACTTGCAAGTGAGTCTTGCAAGGTACCATTCAACTAATGTAATTACGTTAGAGAATGGAAATGGTGCCTTTCATACTGAAGAGGAAACAATGGAACAGGTAATGAAGAAAGAGAACTCTGCTGCTAGTATATTTAGTTGGCTAAAAGTTAATGCACAGACATCAAATTTGACATTAACAAAGGATGTTGTGGGAGTTGTTGCAACCCTTGCCAAAGTTGAGAGCGATGATCTTAGCAGGATTCTTTCTGAATTTTTGGGCTTGGAGACAATGCTTGCAATTGTGTGCAGTTCTTATGAAGGCATTAATGCACTGGAGAAGTATGATCCTGAAGGCTTGATAAACTGTAATGGTGGATTGCATGGTATAGGGTCTTCAATTGGAAAGAGAATAAATGGCCGATTTGTTGTCATATCTCTTGAAGATATAAGACCCTTTGTTGGAGGTTTTGTAGCCAATGATCCACAAAAGAAATTGGCTCTCCCAAAGCCAAGATTACCTAATGGGGAGTGCCCACCTGGGTTTCTTGATTATGCGGTGAACATGATCCATTTGGATTCAAAATATTTATCTTTTCTTACTGACAGTGGGTACGGTCTTAGAGAGACGCTGTTTTATGGACTTTTTTCTCGCCTACAAATATATAAAACCCGGAATGAAATGCTGCTTGCTCTCCCATGCATTCACGACGGAGCTTTGTCCTTGGATGGTGGGATGATTAGGGGACGTGGCATGTTTGCTCTTGGTAGTAGGAAAGATGTAGAAGTGAAGTTTCCTCTAATTTCGGGAGGATCTGATGTACCTCCAAACTATATTGAAACTGAAGAGGCAGTGAGGAAGCTGAATTGGGAAACCTCTAAACTTGCTGCAGATAAACACAGAGAGCAGCAATTATTGGATTATAGGAAAGGGAAACTTCACTAG >Glyma19g44560.2 sequence type=CDS gene model=Glyma19g44560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAAGAGAACTCTGCTGCTAGTATATTTAGTTGGCTAAAAGTTAATGCACAGACATCAAATTTGACATTAACAAAGGATGTTGTGGGAGTTGTTGCAACCCTTGCCAAAGTTGAGAGCGATGATCTTAGCAGGATTCTTTCTGAATTTTTGGGCTTGGAGACAATGCTTGCAATTGTGTGCAGTTCTTATGAAGGCATTAATGCACTGGAGAAGTATGATCCTGAAGGCTTGATAAACTGTAATGGTGGATTGCATGGTATAGGGTCTTCAATTGGAAAGAGAATAAATGGCCGATTTGTTGTCATATCTCTTGAAGATATAAGACCCTTTGTTGGAGGTTTTGTAGCCAATGATCCACAAAAGAAATTGGCTCTCCCAAAGCCAAGATTACCTAATGGGGAGTGCCCACCTGGGTTTCTTGATTATGCGGTGAACATGATCCATTTGGATTCAAAATATTTATCTTTTCTTACTGACAGTGGGTACGGTCTTAGAGAGACGCTGTTTTATGGACTTTTTTCTCGCCTACAAATATATAAAACCCGGAATGAAATGCTGCTTGCTCTCCCATGCATTCACGACGGAGCTTTGTCCTTGGATGGTGGGATGATTAGGGGACGTGGCATGTTTGCTCTTGGTAGTAGGAAAGATGTAGAAGTGAAGTTTCCTCTAATTTCGGGAGGATCTGATGTACCTCCAAACTATATTGAAACTGAAGAGGCAGTGAGGAAGCTGAATTGGGAAACCTCTAAACTTGCTGCAGATAAACACAGAGAGCAGCAATTATTGGATTATAGGAAAGGGAAACTTCACTAG
>Glyma19g44560.1 sequence type=predicted peptide gene model=Glyma19g44560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQPNHPLNLNDDNRERCKNTIKQHEDNLKFLNSQSNQLAESIFDLQVSLARYHSTNVITLENGNGAFHTEEETMEQVMKKENSAASIFSWLKVNAQTSNLTLTKDVVGVVATLAKVESDDLSRILSEFLGLETMLAIVCSSYEGINALEKYDPEGLINCNGGLHGIGSSIGKRINGRFVVISLEDIRPFVGGFVANDPQKKLALPKPRLPNGECPPGFLDYAVNMIHLDSKYLSFLTDSGYGLRETLFYGLFSRLQIYKTRNEMLLALPCIHDGALSLDGGMIRGRGMFALGSRKDVEVKFPLISGGSDVPPNYIETEEAVRKLNWETSKLAADKHREQQLLDYRKGKLH* >Glyma19g44560.2 sequence type=predicted peptide gene model=Glyma19g44560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKENSAASIFSWLKVNAQTSNLTLTKDVVGVVATLAKVESDDLSRILSEFLGLETMLAIVCSSYEGINALEKYDPEGLINCNGGLHGIGSSIGKRINGRFVVISLEDIRPFVGGFVANDPQKKLALPKPRLPNGECPPGFLDYAVNMIHLDSKYLSFLTDSGYGLRETLFYGLFSRLQIYKTRNEMLLALPCIHDGALSLDGGMIRGRGMFALGSRKDVEVKFPLISGGSDVPPNYIETEEAVRKLNWETSKLAADKHREQQLLDYRKGKLH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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